View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_high_25 (Length: 212)
Name: NF3968_high_25
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 26582228 - 26582043
Alignment:
| Q |
10 |
caaagggagaaggaggctagagaaatgcggtaaacactcaattacatcagaaaaattcaggagggattgtgaagtcatggtattattcctaaaaatacct |
109 |
Q |
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| T |
26582228 |
caaagggagaaggaggctagataaatgcggtaaacactcaattacatcagaaaaattcaggagggattgtgaagtcatggtattattcctaaaaatacct |
26582129 |
T |
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| Q |
110 |
tttaatcgatttaggttttatttttccaagaacactttggttctcatggaataaatgtccatgacgacgaattttgaaaatacaat |
195 |
Q |
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| T |
26582128 |
tttaatcgatttaggttttatttttccaagaacactttggttctcatggaataaatgtccatgacgacgaattttggaaatacaat |
26582043 |
T |
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