View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_high_6 (Length: 389)
Name: NF3968_high_6
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 29 - 374
Target Start/End: Original strand, 29054517 - 29054862
Alignment:
| Q |
29 |
agacaaaccgtgtcggtagcagcttccattcaccacgacagcctcagagttcttgaatgggacaaactctccgatttggtctcttcctttgctaccactt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29054517 |
agacaaaccgtgtcggtagcagcttccattcaccacgacagcctcagagttcttgaatgggacaaactctccgatttggtctcttcctttgctaccactt |
29054616 |
T |
|
| Q |
129 |
ccttgggccgtcatgccctcaaggtattcattacatgttagaaccaatcatactagttttcatatctatattttttggtttctggccaactggggaattc |
228 |
Q |
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||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29054617 |
ccttgggtcgtcatgccctcaaggtattcataacatattagaaccaatcttactagttttcatatctatattttttggtttatggccaactggggaattc |
29054716 |
T |
|
| Q |
229 |
agagttcgaaccccgctcctagtatatcaaatatccatgcaccactttgagttgtacttacgagacaagttttgattttatataattaggcctagtttgg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29054717 |
agagttcgaaccccgctcctagtatatcaaatatccatgcaccactttgagttgtatttacgagacaagttttgattttatataattaggcctagtttgg |
29054816 |
T |
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| Q |
329 |
ataaacaaattaattaagagtttatagcgtaaacacttatgatata |
374 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29054817 |
ataaacaaattaattaagagtttataacgtaaacacttatgatata |
29054862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 6738580 - 6738544
Alignment:
| Q |
338 |
ttaattaagagtttatagcgtaaacacttatgatata |
374 |
Q |
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| T |
6738580 |
ttaattaagagtttatagcataaacacttatcatata |
6738544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 753392 - 753341
Alignment:
| Q |
323 |
gtttggataaacaaattaattaagagtttatagcgtaaacacttatgatata |
374 |
Q |
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|||||||||||||| ||||||||| ||||||||| |||||| |||| ||||| |
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| T |
753392 |
gtttggataaacaacttaattaagtgtttatagcataaacatttatcatata |
753341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 22388099 - 22388047
Alignment:
| Q |
316 |
aggcctagtttggataaacaaattaattaagagtttatagcgtaaacacttat |
368 |
Q |
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||||| ||||||||||||||| ||||||||| | ||||| | ||||||||||| |
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| T |
22388099 |
aggcccagtttggataaacaacttaattaagcgcttataacataaacacttat |
22388047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 42974234 - 42974284
Alignment:
| Q |
323 |
gtttggataaacaaattaattaagagtttatagcgtaaacacttatgatat |
373 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||| ||||||||||| |||| |
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| T |
42974234 |
gtttggataagcaacttaattaagagcttatagcataaacacttatcatat |
42974284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 31828920 - 31828965
Alignment:
| Q |
329 |
ataaacaaattaattaagagtttatagcgtaaacacttatgatata |
374 |
Q |
| |
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|||||||| ||||||||| | ||||||||||||||||||| ||||| |
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| T |
31828920 |
ataaacaacttaattaagcgcttatagcgtaaacacttatcatata |
31828965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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