View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3968_low_10 (Length: 340)
Name: NF3968_low_10
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 77 - 327
Target Start/End: Original strand, 36728010 - 36728266
Alignment:
| Q |
77 |
aaatggtggaattcaggttctactgaccaagagttttcaaacatgaaatatttttcctaaaaatatggaacattcttcggctcacaagagagcaataaag |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36728010 |
aaatggtggaattcaggttctactgaccaagagttttcaaacatgaaatatttttcctaaaaatatggaacattcttcggctcacaagagagcaataaag |
36728109 |
T |
|
| Q |
177 |
gataatgataggaagcagtaatagttaagcactctgaaaacatactacaccagttgtttatagtcattgtatggtcgagttacccctccatattca---a |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36728110 |
gataatgataggaagcagtaatagttaagcactctgaaaacatactacaccagttgtttatagtcattgtatggtcgagttacccctccatattcaaata |
36728209 |
T |
|
| Q |
274 |
atcaatcaaacccgcatttgttaatgcctcacggaaacc---attgatgagcttatt |
327 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36728210 |
atcaatcaaacccacatttgttaatgcctcacggaaaccaatattgatgagcttatt |
36728266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University