View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3968_low_11 (Length: 329)

Name: NF3968_low_11
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3968_low_11
NF3968_low_11
[»] chr7 (2 HSPs)
chr7 (11-193)||(4486993-4487176)
chr7 (184-314)||(4487193-4487323)
[»] chr3 (1 HSPs)
chr3 (11-191)||(10316650-10316831)
[»] chr5 (6 HSPs)
chr5 (11-193)||(19022423-19022601)
chr5 (25-193)||(22066319-22066483)
chr5 (184-274)||(22066500-22066590)
chr5 (184-274)||(19022623-19022714)
chr5 (272-314)||(19022871-19022913)
chr5 (272-314)||(22066770-22066812)
[»] scaffold0131 (1 HSPs)
scaffold0131 (51-274)||(13514-13759)
[»] chr8 (1 HSPs)
chr8 (272-314)||(22619698-22619740)
[»] chr6 (2 HSPs)
chr6 (207-271)||(32091979-32092045)
chr6 (204-274)||(12287137-12287209)
[»] chr1 (1 HSPs)
chr1 (204-274)||(9391906-9391978)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 4486993 - 4487176
Alignment:
Q  11 cacagaactagcaaagacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4486993 cacagaactagcaaagacccaaaaaataaagcaaaatacagccattgtaattacgcctattgatcacccaacaacctgctggacctatgacagcccccac 4487092  T
Q  111 gcaacaaagaaaaaactgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaaca 193  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  4487093 gcaacaaagaaaaaactgcacttcacatcaagtaaaaatgcagccagcagacccacaaaaacccgcaaaacctccaacacaaca 4487176  T

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Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 4487193 - 4487323
Alignment:
Q  184 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaaacccgataa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4487193 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaatagaaacccgataa 4487292  T
Q  284 cctcggcctatgttttctcaacaaaaaatat 314  Q
    |||||||||||||||||||||||||||||||    
T  4487293 cctcggcctatgttttctcaacaaaaaatat 4487323  T

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Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 10316650 - 10316831
Alignment:
Q  11 cacagaactagcaaagacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccac 110  Q
    ||||||| ||||| |||||||||||||||| |||| ||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||    
T  10316650 cacagaagtagcatagacccaaaaaataaatcaaactacagccaccgtaattacgcctattgatcaccccacaacctgctggacctatgacagccctcac 10316749  T
Q  111 gcaacaaagaaaaaactgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaa 191  Q
    |||||||||||||||||||| | | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  10316750 gcaacaaagaaaaaactgcattgcacatcaagtaaaaacacagcctacagacccacaaaaacccgcaaaacctccaacacaa 10316831  T

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Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 19022423 - 19022601
Alignment:
Q  11 cacagaactagcaaagacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccac 110  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||     ||| |||||||    
T  19022423 cacagaagtagcacagacccaaaaaataaagcaaaatacagccaccgtaattacgcctattgatcaccccacaacctgctggac-----acaacccccac 19022517  T
Q  111 gcaacaaagaaaaaactgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaaca 193  Q
     |||||||||||||| |||||| | ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  19022518 acaacaaagaaaaaattgcactgcacatcaagtaaaaacgcagcctgcagaccgacaaaaacccgcaaaacctccaacacaaca 19022601  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 22066319 - 22066483
Alignment:
Q  25 agacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccacgcaacaaagaaaaa 124  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||     |||||||||||||||||||||||||    
T  22066319 agacccaaaaaataaagcaaaatacagccaccgtaattacgcctattgatcaccccacaacctgctggac-----acagcccccacgcaacaaagaaaaa 22066413  T
Q  125 actgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaaca 193  Q
    |||||||| | |||   ||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  22066414 actgcactgcacatattgtaaaaacgcagcctgcagacccacaaaaacccgcaaaatctccaacacaaca 22066483  T

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Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 22066500 - 22066590
Alignment:
Q  184 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22066500 caacacaacacaacacctatcacagtcctctagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaa 22066590  T

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Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 19022623 - 19022714
Alignment:
Q  184 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaag-aaaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19022623 caacacaacacaacacctatcacagtcctctagtttgtgttccattcgaaagaaaaaaatgataagacaagaatctaattcacaaaacagaa 19022714  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 19022871 - 19022913
Alignment:
Q  272 gaaacccgataacctcggcctatgttttctcaacaaaaaatat 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  19022871 gaaacctgataacctcggcctatgttttctcaacaaaaaatat 19022913  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 22066770 - 22066812
Alignment:
Q  272 gaaacccgataacctcggcctatgttttctcaacaaaaaatat 314  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  22066770 gaaacctgataacctcggcctatgttttctcaacaaataatat 22066812  T

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Target: scaffold0131 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 13759 - 13514
Alignment:
Q  51 gccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccacgcaacaaagaaaaaactgcacttc-catcaagtaaaaacg 149  Q
    ||||| ||||||  ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| || || | ||||||| |||||||    
T  13759 gccaccgtaattatgcctattgatcactccacaacctgctggacctatgacagcccccacgcaacatagaaaaaaccgcgctgcacatcaaggaaaaacg 13660  T
Q  150 cagccaacagacccacaaaaacccgcaaaacctc---------------------caacacaacacaacacctatcacagtcctatagtttgtgttccat 228  Q
    |||| | ||||||||||||||||||| |||||||                     ||||||||||||||||||| | ||||||| |||||||||||||||    
T  13659 cagctagcagacccacaaaaacccgcgaaacctcaaacacaacaggcagcagccacaacacaacacaacacctaacgcagtcctctagtttgtgttccat 13560  T
Q  229 tcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    || |||||||||| ||||||||| ||||||| ||||||||||||||    
T  13559 tcaaaagaaaaaaagataagacaggaatctatttcacaaaacagaa 13514  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 22619698 - 22619740
Alignment:
Q  272 gaaacccgataacctcggcctatgttttctcaacaaaaaatat 314  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  22619698 gaaacccgataacctcgacttatgttttctcaacaaaaaatat 22619740  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 32092045 - 32091979
Alignment:
Q  207 agtcctatagtttgtgttccattcgaaaga--aaaaatgataagacaagaatctaattcacaaaaca 271  Q
    ||||||||||||||||||||||| ||||||  ||| || | |||| | |||||||||||||||||||    
T  32092045 agtcctatagtttgtgttccattagaaagaacaaagattaaaagataggaatctaattcacaaaaca 32091979  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 12287137 - 12287209
Alignment:
Q  204 cacagtcctatagtttgtgttccattcgaaaga--aaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||||| |||||||||||||||| ||||||  ||| || | |||| | ||||||||||||||||| ||||    
T  12287137 cacagtcctgtagtttgtgttccattagaaagaacaaagattaaaagataggaatctaattcacaaaagagaa 12287209  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 9391906 - 9391978
Alignment:
Q  204 cacagtcctatagtttgtgttccattcgaaaga--aaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||| | |||||||||||||||| ||||||  |||||| | || | | ||||||||||||||||||||||    
T  9391906 cacagtcttgtagtttgtgttccattagaaagaacaaaaattaaaaaataggaatctaattcacaaaacagaa 9391978  T

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