View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3968_low_16 (Length: 294)
Name: NF3968_low_16
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 276
Target Start/End: Original strand, 21835829 - 21835959
Alignment:
| Q |
146 |
tgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactgtttaatctgatttctgaggtcacctatggt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||| |||| ||| ||| ||||||| ||||||| | |
|
|
| T |
21835829 |
tgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttactctttattctaattgctgaggttacctatgct |
21835928 |
T |
|
| Q |
246 |
ttatttgctaatgaatttgatgaaatgtatc |
276 |
Q |
| |
|
|| |||||||| |||| ||||||| |||||| |
|
|
| T |
21835929 |
ttgtttgctaacgaatgtgatgaattgtatc |
21835959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 21835696 - 21835743
Alignment:
| Q |
27 |
tggttgcagttcaaagaaattttcgcaggtttggaattgaagaaatag |
74 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
21835696 |
tggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatag |
21835743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 392352 - 392285
Alignment:
| Q |
195 |
ttattaacctcattgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatt |
262 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |||| |
|
|
| T |
392352 |
ttattaacctcattgttactgttcaatctgatttctgaggtcacctttgctttatttgctaataaatt |
392285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 6414440 - 6414336
Alignment:
| Q |
116 |
gttataattgttggtgcaagaagtttgttttgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactg |
215 |
Q |
| |
|
||||||||| || | |||| |||||| || ||| | |||||||||||||||||||||| |||||||||| || ||| ||||||||||| |||||||||| |
|
|
| T |
6414440 |
gttataattttttgcgcaaaaagtttattctgtcgtattaatgtgtagttttccaaaatgatttgttgaccggaaaactttattaacctaattgttactg |
6414341 |
T |
|
| Q |
216 |
tttaa |
220 |
Q |
| |
|
|||| |
|
|
| T |
6414340 |
attaa |
6414336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 392425 - 392382
Alignment:
| Q |
86 |
aactgagtgcctaagaatttcctttatttcgttataattgttgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
392425 |
aactgagtgcctaagaatttcctttattttgttattattgttgg |
392382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 392388 - 392351
Alignment:
| Q |
145 |
ttgttggattaatgtgtagttttccaaaaggatttgtt |
182 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
392388 |
ttgttggaatgatgtgtagttttccaaaaggatttgtt |
392351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 6590575 - 6590612
Alignment:
| Q |
237 |
acctatggtttatttgctaatgaatttgatgaaatgta |
274 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
6590575 |
acctatgtttaatttgctaatgaatttgatgaaatgta |
6590612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 37046524 - 37046587
Alignment:
| Q |
207 |
ttgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatttgatgaaat |
271 |
Q |
| |
|
||||||||||||| ||||| | ||| ||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
37046524 |
ttgttactgtttattctgactgctg-ggttacctatgtttaatttgctaatgaatttgatgaaat |
37046587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University