View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3968_low_17 (Length: 253)
Name: NF3968_low_17
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_17 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 34673426 - 34673292
Alignment:
| Q |
119 |
aacaacaatagtattactaataatgtatctatcattcttttttccccttctaaattcccttccacaatacgaaatgaataagagtttaatgaatatacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673426 |
aacaacaatagtattactaataatgtatctatcattcttttttccccttctaaattcccttccacaatacgaaatgaataagagtttaatgaatatacat |
34673327 |
T |
|
| Q |
219 |
tgatagtgtcgcccaatcatatttcacagttatgt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673326 |
tgatagtgtcgcccaatcatatttcacagttatgt |
34673292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 34673537 - 34673455
Alignment:
| Q |
11 |
ttatactatcagtaggtcggttcctgcttgttctattgtggtgaaataaaatctgattattgacgtgtcctcgctactaatgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673537 |
ttatactatcagtaggtcggttcctgcttgttctattgtggtgaaataaaatctgattattgacgtgtcctcgctactaatgt |
34673455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 34790157 - 34790239
Alignment:
| Q |
164 |
ccttctaaattcccttccacaatacgaaatgaataagagtttaatgaatatacattgatagtgtcgcccaatcatatttcaca |
246 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||| ||||||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
34790157 |
ccttctaaatgctcctccacaatacgaaatgaatacgagtttaataaatatgcattgataccttcatccaatcatatttcaca |
34790239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University