View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_low_18 (Length: 251)
Name: NF3968_low_18
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 38830992 - 38830762
Alignment:
| Q |
1 |
tacacaatctgcgcactaaccacttgcgctaggttttttctccttctttaagcacatggcaataccttatgatttaggtaataggaagttcatgtgaagc |
100 |
Q |
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| T |
38830992 |
tacacaatctgcgcactaaccacttgcgctaggttttttctccttctttaagcacatggcaataccttatgatttaggtaataggaagttcatgtgaagc |
38830893 |
T |
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| Q |
101 |
tgagctaaccttgaatgatctgtcgctatctttatatttagtcttaacaagtttttgaatgcaaaagaactcacgggtatactgtaagcaagagagagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38830892 |
tgagctaaccttgaatgatctgtcgctatctttatatttagtcttaacaagtttttgaatgcaaaagaactcacgggtatactgtaagcaagagagagat |
38830793 |
T |
|
| Q |
201 |
atatctcataaccttattgttggaataactattt |
234 |
Q |
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||||||||||||| |||||||||||||||||| |
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| T |
38830792 |
atatctcataacc---ttgttggaataactattt |
38830762 |
T |
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