View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_low_20 (Length: 239)
Name: NF3968_low_20
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 40899041 - 40899237
Alignment:
| Q |
7 |
tggacatcatcatgggtcatgcatttgatggagtttgacttgtctttgaacacataatattctccttttactgttactcagcatcgttagcatccatcaa |
106 |
Q |
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| T |
40899041 |
tggaaatcatcaggggtcatgcatttgatggagtttgatttgtctttgaacacataatattctccttttactgttac--agcatcgttagcatccatcaa |
40899138 |
T |
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| Q |
107 |
tcaatcaaaaattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
205 |
Q |
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| T |
40899139 |
tcaatcaaaaattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatccttgaattca |
40899237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 44154316 - 44154520
Alignment:
| Q |
7 |
tggacatcatcatgggtcatgcatttgatggagtttgacttgtctttgaacacataatattctccttttactgttactcagcatcgttagcatccatcaa |
106 |
Q |
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|||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |
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| T |
44154316 |
tggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttact--gcatcattagcatccatcaa |
44154413 |
T |
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| Q |
107 |
tcaatcaa--------aaattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatcctt |
198 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44154414 |
tcaatcaattaatcaaacattaattaccaacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaacatcctt |
44154513 |
T |
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| Q |
199 |
gaattca |
205 |
Q |
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||||||| |
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| T |
44154514 |
gaattca |
44154520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 40893829 - 40893762
Alignment:
| Q |
126 |
caacaacaacacattcaaaaatcataatgaaacattctaaattcaaacaaatgaaatcagaaagaaca |
193 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||| |
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| T |
40893829 |
caacaacaacacattcaaaaatcataattaaaccatctaaactaaaacaaatgaaatcagaaacaaca |
40893762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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