View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_low_3 (Length: 641)
Name: NF3968_low_3
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 10 - 641
Target Start/End: Complemental strand, 38831593 - 38830972
Alignment:
| Q |
10 |
agagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaaggaaacttattggaaagcatcaatttcg |
109 |
Q |
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| T |
38831593 |
agagatgaaagccaaagagaaatggaggagaatttatcaattgagacatgtgactttgctgatctttccgaagggaacttattggaaagcatcaatttcg |
38831494 |
T |
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| Q |
110 |
aattcgatgatgatttcttcgtatgtttcaacgacggagatgtgttaccggatcttgagatggacccggaaatgcttgctgaattctccctcagcagcag |
209 |
Q |
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| T |
38831493 |
aattcgatgatgatttcttcgtatgcttcaacgacggagatgtgttaccggatcttgagatggacccggaaatgcttgctgaattctccctcagcagcag |
38831394 |
T |
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| Q |
210 |
cggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaa |
309 |
Q |
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| T |
38831393 |
cggtgaggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaa |
38831294 |
T |
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| Q |
310 |
gtagtttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgaga |
409 |
Q |
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| T |
38831293 |
gtagtttattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgaga |
38831194 |
T |
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| Q |
410 |
aaggaagaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagttaaggtgagttactatatatataattgctatttaatttggtatat |
509 |
Q |
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| T |
38831193 |
aaggaagaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagtgaaggtgag-----------ataattgctatttaatttggtatat |
38831105 |
T |
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| Q |
510 |
gtttgttaattagttacaaacccttttacttaa-nnnnnnnncttttcaaaagaccctttgttgattgtttattataagaaattgaacttcttatccgga |
608 |
Q |
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| T |
38831104 |
gtttgttaattagttacaaacccttttacttaatttttttttcttttcaaaagaccctttgttgattgtttattataagaaattgaacttcttatccgga |
38831005 |
T |
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| Q |
609 |
gcttacaacgcttacacaatctgcgcactaacc |
641 |
Q |
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| T |
38831004 |
gtttacaacgcttacacaatctgcgcactaacc |
38830972 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 30463872 - 30463923
Alignment:
| Q |
59 |
gtgactttgctgatctttccgaaggaaacttattggaaagcatcaatttcga |
110 |
Q |
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| T |
30463872 |
gtgactttggcgacctttccgaaggaaatttattggaaagcatcaacttcga |
30463923 |
T |
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