View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_low_7 (Length: 369)
Name: NF3968_low_7
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_7 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 5805 - 6145
Alignment:
| Q |
12 |
atgaatgtgagagctgaataatgcacttattcggtgaagacggtggaggttctggcggtaggtaaggagccagaggtggaaccgcgtcttaaaccagtgg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5805 |
atgaatgtgagagctgaataatgcacttattcggtgaagacggtggaggttctggcggtaggtaaggagccagaggtggaaccgcgtcttaaaccagtgg |
5904 |
T |
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| Q |
112 |
atgtggataatgtggtggtggggctgacagagtgagaggtgcagctgcgtgatttccttctcccaccgagttgttgatgttcatcaattttttaggagaa |
211 |
Q |
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| T |
5905 |
atgtggataatgtggtggtggggctgacagagtgagaagtgcagctgcgtgatttccttctcccaccgagttgttgatgttcatcaattttttaggagaa |
6004 |
T |
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| Q |
212 |
gtgatgaactcttttggattttgttcgagtttcaattctgattctgatggtggtggtgttaactgcacattgggttttggttgcgggtggaatggattat |
311 |
Q |
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| T |
6005 |
gtgataaactcttttggattttgttcgagtttcaattctgattctgatggtggtggtgttaactgcacattgggttttggttgcgggtggaatggattat |
6104 |
T |
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| Q |
312 |
tggcatcagaaacacacaatggctgtgaaacgagaggttct |
352 |
Q |
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| T |
6105 |
tggcatcggaaacacacaatggctgtgaaacgagaggttct |
6145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 23386663 - 23386323
Alignment:
| Q |
12 |
atgaatgtgagagctgaataatgcacttattcggtgaagacggtggaggttctggcggtaggtaaggagccagaggtggaaccgcgtcttaaaccagtgg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386663 |
atgaatgtgagagctgaataatgcacttattcggtgaagacggtggaggttctggcggtaggtaaggagccagaggtggaaccgcgtcttaaaccagtgg |
23386564 |
T |
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| Q |
112 |
atgtggataatgtggtggtggggctgacagagtgagaggtgcagctgcgtgatttccttctcccaccgagttgttgatgttcatcaattttttaggagaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386563 |
atgtggataatgtggtggtggggctgacagagtgagaagtgcagctgcgtgatttccttctcccaccgagttgttgatgttcatcaattttttaggagaa |
23386464 |
T |
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| Q |
212 |
gtgatgaactcttttggattttgttcgagtttcaattctgattctgatggtggtggtgttaactgcacattgggttttggttgcgggtggaatggattat |
311 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23386463 |
gtgataaactcttttggattttgttcgagtttcaattctgattctgatggtggtggtgttaactgcacattgggttttggttgcgggtggaatggattat |
23386364 |
T |
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| Q |
312 |
tggcatcagaaacacacaatggctgtgaaacgagaggttct |
352 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23386363 |
tggcatcggaaacacacaatggctgtgaaacgagaggttct |
23386323 |
T |
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