View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_low_9 (Length: 341)
Name: NF3968_low_9
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_low_9 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 130570 - 130898
Alignment:
| Q |
1 |
ctattgaactaaacaatgtaattgtttgtacttgtcaacattcaataataaaataattattcattgtcaatatttatctcatatcatacataggatttca |
100 |
Q |
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| T |
130570 |
ctattgaactcaacaatgtaatcgtttgtacttgtcgacatgcaataataaaatcattattcattttcaatatttatctcatatcatacttaggatttca |
130669 |
T |
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| Q |
101 |
acaaggaattatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcg |
200 |
Q |
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| T |
130670 |
acaaggaatgatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcg |
130769 |
T |
|
| Q |
201 |
agaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctg |
300 |
Q |
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| T |
130770 |
agaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctg |
130869 |
T |
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| Q |
301 |
acacctgaaccgttgggaagcatcaatct |
329 |
Q |
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| T |
130870 |
acacctgaaccgttgggaagcatcaatct |
130898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 136 - 329
Target Start/End: Original strand, 81993 - 82188
Alignment:
| Q |
136 |
aaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcg |
235 |
Q |
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| T |
81993 |
aaaacaagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacg |
82092 |
T |
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| Q |
236 |
aaattcta--acgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcatcaatct |
329 |
Q |
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| T |
82093 |
aaattcaaatatgaatcggtggcaaaatccgatccctctggttccatggaaggaagcgaatcctccaacagctgaaccgtggggaatcatcaatct |
82188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 13601913 - 13602241
Alignment:
| Q |
1 |
ctattgaactaaacaatgtaattgtttgtacttgtcaacattcaataataaaataattattcattgtcaatatttatctcatatcatacataggatttca |
100 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
13601913 |
ctattgaactcaacaatgtaatcgtttgtacttgtcgacatgcaataataaaatcattattcattttcaatatttatctcatatcatacttaggatttca |
13602012 |
T |
|
| Q |
101 |
acaaggaattatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcg |
200 |
Q |
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| T |
13602013 |
acaaggaatgatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcg |
13602112 |
T |
|
| Q |
201 |
agaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctg |
300 |
Q |
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| T |
13602113 |
agaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctg |
13602212 |
T |
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| Q |
301 |
acacctgaaccgttgggaagcatcaatct |
329 |
Q |
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| T |
13602213 |
acacctgaaccgttgggaagcatcaatct |
13602241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 307
Target Start/End: Complemental strand, 19153326 - 19153081
Alignment:
| Q |
57 |
ttattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcataagatttcttgcaaaacaagttaataactgcct |
156 |
Q |
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|||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||| || ||||||| ||||| |||||||||| | | |
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| T |
19153326 |
ttattcattgccaatatttatctccta-----cataggatttcaacaaggaattgtggggatttcacaatatttctttcaaaagaagttaataagcgttt |
19153232 |
T |
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| Q |
157 |
tatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggc |
256 |
Q |
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| T |
19153231 |
tatattggattttaagtaaacttggcgcttatcaggtggttgccagaaattgattgaaagagcggtggcgacggttacaaaatttgaatgagttggtggt |
19153132 |
T |
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| Q |
257 |
agaacccaatccctctagttccatggaaggaagcgaatcctctgacacctg |
307 |
Q |
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||| || ||| ||| ||||||||||||||| |||||||| |||||||| |
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| T |
19153131 |
ggaatccgatctctcatgttccatggaaggaattgaatcctccgacacctg |
19153081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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