View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_high_13 (Length: 286)
Name: NF3969_high_13
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 34311833 - 34311562
Alignment:
| Q |
1 |
agagatcgaataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatgg |
100 |
Q |
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| T |
34311833 |
agagatcggataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaataaccaacaagaataagcaagagaaatgg |
34311734 |
T |
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| Q |
101 |
tacgagtaacatgttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatg-----nnnnnnnnnaa |
195 |
Q |
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| T |
34311733 |
tacgagtaacatgttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatgttttttttttttttta |
34311634 |
T |
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| Q |
196 |
aattgctggtatgttatatttataggttgtaaaaagctacatgcatggttcttgaagattc-tataaatgac |
266 |
Q |
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| T |
34311633 |
agttgctggtatgttatatttataggttgtaaaaagttgcatgcatggttcttgaagattcatataaatgac |
34311562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34323138 - 34323273
Alignment:
| Q |
1 |
agagatcgaataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaac---aagaataagcaagagaaa |
97 |
Q |
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| T |
34323138 |
agagatcggacaagagtgtgttgggtgaatccatgaatggtagcaataacccttttgcattggaaggaaaattaccaacaagaagaataatcaagagaat |
34323237 |
T |
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| Q |
98 |
tggtacgagtaacatgttgagttgttctagcctcat |
133 |
Q |
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| T |
34323238 |
tggtataagcgacatgttgagttgttgtagcctcat |
34323273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 34314242 - 34314160
Alignment:
| Q |
51 |
ccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
133 |
Q |
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| T |
34314242 |
ccttttgctttggtaggaaaaccaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34314160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 34305021 - 34305074
Alignment:
| Q |
80 |
aagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
133 |
Q |
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| T |
34305021 |
aagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34305074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 34317511 - 34317578
Alignment:
| Q |
66 |
ggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
133 |
Q |
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| T |
34317511 |
ggaaaactaccagcaagaacaatcaagaaaaaaagtactagtaacatgttgagttgttgtagcctcat |
34317578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 33426045 - 33426001
Alignment:
| Q |
86 |
aagcaagagaaatggtacgagtaacatgttgagttgttctagcct |
130 |
Q |
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| T |
33426045 |
aagcaagaaaaatggtactggtaacatgttgagttgttgtagcct |
33426001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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