View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3969_high_15 (Length: 254)
Name: NF3969_high_15
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 44576014 - 44576237
Alignment:
| Q |
18 |
ataacaagtgcaatggtgaaagtgaaataccaccaattaaagaagctctctaattgtccccttccctttgctgtgttggtgtcaaattggtcagcaccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44576014 |
ataacaagtgcaatggtgaaagtgaaataccaccaattaaagaagctctctaattgtccccttccctttgctgtgttggtgtcaaattggtcagcaccaa |
44576113 |
T |
|
| Q |
118 |
atgcaatgttgcaaggcctaattccaccagctccaatggataatagtccaagacctgtaaatagaactcctagttgccaatcttttggatgtttacaatt |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44576114 |
atgcaatgttacaaggcctaattccaccagcaccaatggataatagtccaagacctgtaaatagaactcctagttgccaatcttttggatgttgacaatt |
44576213 |
T |
|
| Q |
218 |
aggtctatcattatcatcacaggt |
241 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
44576214 |
aggcctatcattatcatcacaggt |
44576237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University