View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3969_high_2 (Length: 483)
Name: NF3969_high_2
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 141 - 476
Target Start/End: Complemental strand, 9715235 - 9714900
Alignment:
| Q |
141 |
aaataccttgatacgtcagaagaaaaagatgaatgcccttcattggatggagtctccatctttctatgcatcaatcctgaatccaaaccttcctttgcct |
240 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9715235 |
aaataccttgatttgtcagaagaaaaagataaatgcccttcattggatggagtctccatctttctatgcatcaatcttgaatccaaaccttcctttgcct |
9715136 |
T |
|
| Q |
241 |
cagcagtaaaattggaaaagacactggatttagcttcacaatcaaaacatgtttttatattgtaatcacttatactcgcatatgattgttctcctagata |
340 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9715135 |
cagcagcaaaattggaaaagatgctagatttagcttcacaatcaaaacatgtttttatattgtaatcacttattcccgcatatgattgttctcctagata |
9715036 |
T |
|
| Q |
341 |
cttctctcgaggaggaggaagatcacaattctcaacataattgagtgatttctgcaaaaccaagaaagctaattcatttctatccgtagttttccaccat |
440 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9715035 |
cttctctcgaggaggaggaagattacaattctcaacataattgagtgatttctgcaaaaccaagaaagctaattcatttctatccgtagttttccaccat |
9714936 |
T |
|
| Q |
441 |
ggttgagcaccatcatcttcaatccaagaataatct |
476 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9714935 |
ggttgagcaccgtcatcttcaatccaagaataatct |
9714900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 48877359 - 48877425
Alignment:
| Q |
351 |
ggaggaggaagatcacaattctcaacataattgagtgatttctgcaaaaccaagaaagctaattcat |
417 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| || |||| ||| ||||||| |||| |
|
|
| T |
48877359 |
ggaggaggaagatcacaattctcaatatggttgagtgatttgtgtgaaacaaaggaagctaactcat |
48877425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University