View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_high_4 (Length: 395)
Name: NF3969_high_4
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 378
Target Start/End: Complemental strand, 35768675 - 35768315
Alignment:
| Q |
30 |
ttactatccctactctaagctaaaactcgaaacagaaacaccgaaataaaccaagaacaaattaaaatttctgcaacaataa--------cacctt-gac |
120 |
Q |
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| T |
35768675 |
ttactatccctactctaagctaaaactccaaacagaaacaccaaaataaaccaaaaacaaattaaaatttttgcaacaataagtcaataacacctttgac |
35768576 |
T |
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| Q |
121 |
cttgtcataacagtatcaaacaccaatttgagcttcacaatgtgattg-catgccagaatcaaaatatagacatcattcaaatttgtcgtaagcttcttc |
219 |
Q |
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| T |
35768575 |
cttgtcataacagtatcaaacaccaatttgagcttcacaatgtaattggcatgccagaatcaaaatatatacattattaaaatttgtcgtaagcttcttc |
35768476 |
T |
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| Q |
220 |
ctttgtctgaacaaaactgatgaaccactattggcttgcagat--ccttcattaggcaacatctccatatcattgagaaaaacaatagaaattaacagca |
317 |
Q |
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| T |
35768475 |
ctttgtctgaacaaaactgttgaaccactattggcttgcagatatccttcattaggcaagatctccatatcattgagaaaagcaaaagaaattaatagca |
35768376 |
T |
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| Q |
318 |
tataaaatccgattagcaagatttctctgtggaagtcaccgcctgccgaagctgcacaaaa |
378 |
Q |
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| T |
35768375 |
tataaaatccgattagcaagatttctctgtggaaattaccgcctgccaaagctgcacaaaa |
35768315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 35764487 - 35764420
Alignment:
| Q |
49 |
ctaaaactcgaaacagaaacaccgaaataaaccaagaacaaattaaaatttctgcaacaataacaccttg |
118 |
Q |
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| T |
35764487 |
ctaaaactccaaacataaacaccaaaataaaccaagaac-aattaaaacttcggc-acaataacaccttg |
35764420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 15556081 - 15556167
Alignment:
| Q |
152 |
gcttcacaatgtgattgcatgccagaatcaaaatatagacatca-ttcaaatttgtcgtaagcttcttcctttgtctgaacaaaact |
237 |
Q |
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|||| |||||||| ||||||||||| || ||||||||||||| | || |||||||||| ||||||||||||||||||| ||||||| |
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| T |
15556081 |
gctttacaatgtggttgcatgccagtatgaaaatatagacattaattaaaatttgtcggaagcttcttcctttgtctgcgcaaaact |
15556167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 375
Target Start/End: Original strand, 15556276 - 15556337
Alignment:
| Q |
314 |
agcatataaaatccgattagcaagatttctctgtggaagtcaccgcctgccgaagctgcaca |
375 |
Q |
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| T |
15556276 |
agcatacaaaatcccattagcaagatttctccgtggaaatcaccgcctgctgaagctgcaca |
15556337 |
T |
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