View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_1 (Length: 502)
Name: NF3969_low_1
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 34972304 - 34971930
Alignment:
| Q |
1 |
accataatcaaaatgagtcttgtcataacactagcaggtggcatgtttgttggcttagcttcaccttgggatccagctttaggatgaagctcagtagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34972304 |
accataatcaaaatgagtcttgtcataacactagcaggtggcatgtttgttggcttagcttcaccttgagatccagctttaggatgaagctcagtagttg |
34972205 |
T |
|
| Q |
101 |
agcttgaaccaagtttggatagcactggtccttctttgtccacaccattagcaacagttctatttccaaagctaaactcatcatgaccaaattcttcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972204 |
agcttgaaccaagtttggatagcactggtccttctttgtccacaccattagcaacagttctatttccaaagctaaactcatcatgaccaaattcttcata |
34972105 |
T |
|
| Q |
201 |
atctaaataaaccaaacaaattaaggnnnnnnntatcatacatccatttaaaaaacatgagtaaaatgacacattgttgtatgcagaaacaaccaaatac |
300 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972104 |
atctaaataaaccaaacaaataaaggaaaaaaatatcatacatccatttaaaaaacatgagtaaaatgacacattgttgtatgcagaaacaaccaaatac |
34972005 |
T |
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| Q |
301 |
tagtggatacaaacaaactatactatatataaaccccacttaagccatgcttattcaactaccaagtactaatagtagag |
380 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972004 |
tagtggatacaagcaa-----actatatataaaccccacttaagccatgcttattcaactaccaagtactaatagtagag |
34971930 |
T |
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