View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_10 (Length: 311)
Name: NF3969_low_10
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 1196786 - 1197067
Alignment:
| Q |
13 |
aatattaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgc |
112 |
Q |
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| T |
1196786 |
aatattaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgc |
1196885 |
T |
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| Q |
113 |
taattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaat |
212 |
Q |
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| T |
1196886 |
taattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaat |
1196985 |
T |
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| Q |
213 |
cctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatat |
294 |
Q |
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| T |
1196986 |
cctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatat |
1197067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 7289790 - 7289515
Alignment:
| Q |
17 |
ttaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||| |||||||||| ||| |
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| T |
7289790 |
ttaattattatatttatctacacaatggactttgaggatgatgagaacaaacgagttaattttctaaagaacaataactcatcatttcttcaatgccaat |
7289691 |
T |
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| Q |
117 |
tgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctc |
216 |
Q |
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| T |
7289690 |
tgatctacattcttg-tttgaacacta-tccttattctttccatgatcttcaaccatcttcaaaatacactcaaaagtagagacttcacaaagaatcctc |
7289593 |
T |
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| Q |
217 |
aatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatat |
294 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7289592 |
aaaacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacacaaatat |
7289515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 164 - 293
Target Start/End: Complemental strand, 50471318 - 50471189
Alignment:
| Q |
164 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
263 |
Q |
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|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
50471318 |
cttcaaccatcttcaagatactctcaaacactgaaacttcacaaggaattctcagaacaccagtttgttcaaacccaaattcttcttcagcttctctgag |
50471219 |
T |
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| Q |
264 |
aagaatctgaaaagcttgatgacccaaata |
293 |
Q |
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| T |
50471218 |
taatatatgaaaggcttgatgagccaaata |
50471189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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