View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3969_low_11 (Length: 302)

Name: NF3969_low_11
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3969_low_11
NF3969_low_11
[»] chr4 (15 HSPs)
chr4 (18-273)||(41633047-41633304)
chr4 (119-266)||(42457118-42457263)
chr4 (18-105)||(18375502-18375589)
chr4 (18-105)||(24683076-24683163)
chr4 (18-105)||(26179322-26179409)
chr4 (33-105)||(17847664-17847736)
chr4 (22-105)||(47281652-47281735)
chr4 (18-91)||(37674112-37674185)
chr4 (20-105)||(41878321-41878406)
chr4 (57-105)||(4098532-4098580)
chr4 (19-101)||(54021358-54021432)
chr4 (20-107)||(30508940-30509027)
chr4 (19-66)||(47839055-47839102)
chr4 (18-105)||(23348228-23348316)
chr4 (53-105)||(54358102-54358154)
[»] chr8 (17 HSPs)
chr8 (114-266)||(33055906-33056056)
chr8 (27-106)||(41322528-41322607)
chr8 (19-105)||(4851733-4851819)
chr8 (19-96)||(29314008-29314085)
chr8 (19-106)||(34392107-34392194)
chr8 (18-95)||(39112658-39112735)
chr8 (19-105)||(8551489-8551575)
chr8 (19-83)||(36473162-36473226)
chr8 (19-98)||(1005596-1005675)
chr8 (26-105)||(3607036-3607115)
chr8 (20-67)||(4794159-4794206)
chr8 (18-86)||(11653822-11653894)
chr8 (19-64)||(11643324-11643369)
chr8 (28-104)||(33888865-33888942)
chr8 (59-106)||(1196506-1196553)
chr8 (19-73)||(2001680-2001733)
chr8 (18-106)||(15562026-15562114)
[»] chr5 (16 HSPs)
chr5 (18-106)||(32891173-32891261)
chr5 (18-106)||(4391957-4392045)
chr5 (18-104)||(11739331-11739417)
chr5 (28-101)||(35672431-35672504)
chr5 (18-102)||(8692511-8692595)
chr5 (18-105)||(228023-228110)
chr5 (18-101)||(37094023-37094106)
chr5 (18-84)||(3456773-3456839)
chr5 (19-105)||(34286594-34286679)
chr5 (19-96)||(28434210-28434287)
chr5 (18-105)||(41326560-41326647)
chr5 (18-105)||(29223465-29223550)
chr5 (18-106)||(38614292-38614384)
chr5 (28-85)||(31644658-31644715)
chr5 (68-105)||(42148869-42148906)
chr5 (61-101)||(43141523-43141563)
[»] chr1 (19 HSPs)
chr1 (18-106)||(29095634-29095722)
chr1 (18-106)||(20808946-20809034)
chr1 (22-104)||(31032813-31032895)
chr1 (18-105)||(34475899-34475986)
chr1 (20-105)||(41646576-41646660)
chr1 (18-101)||(1270175-1270258)
chr1 (18-105)||(42480121-42480208)
chr1 (18-104)||(4194767-4194853)
chr1 (24-106)||(9098684-9098766)
chr1 (28-105)||(34807936-34808013)
chr1 (18-105)||(24135755-24135840)
chr1 (19-105)||(16254855-16254940)
chr1 (19-105)||(47550791-47550877)
chr1 (37-105)||(7167455-7167523)
chr1 (18-58)||(44714920-44714960)
chr1 (18-105)||(50663730-50663818)
chr1 (19-94)||(27143671-27143746)
chr1 (20-67)||(48148828-48148875)
chr1 (69-105)||(2958833-2958869)
[»] chr3 (17 HSPs)
chr3 (18-106)||(45166225-45166313)
chr3 (18-104)||(50612986-50613072)
chr3 (18-106)||(1561367-1561455)
chr3 (18-106)||(23643091-23643179)
chr3 (18-105)||(31788305-31788392)
chr3 (18-105)||(36517514-36517601)
chr3 (18-111)||(38176501-38176594)
chr3 (18-105)||(521876-521963)
chr3 (19-105)||(34624589-34624674)
chr3 (18-102)||(39145254-39145338)
chr3 (18-116)||(52546731-52546829)
chr3 (27-95)||(20912177-20912245)
chr3 (18-101)||(51297137-51297219)
chr3 (35-105)||(43203248-43203318)
chr3 (54-105)||(544634-544685)
chr3 (49-105)||(11358880-11358937)
chr3 (20-68)||(9496567-9496615)
[»] chr2 (18 HSPs)
chr2 (18-105)||(2752745-2752832)
chr2 (18-106)||(13685992-13686080)
chr2 (18-102)||(42263834-42263918)
chr2 (18-105)||(28716451-28716538)
chr2 (18-99)||(35676389-35676470)
chr2 (18-113)||(23454372-23454468)
chr2 (18-87)||(14941100-14941169)
chr2 (18-84)||(25414934-25415000)
chr2 (18-90)||(3810381-3810453)
chr2 (18-105)||(35323587-35323674)
chr2 (19-105)||(28429281-28429367)
chr2 (18-96)||(41465011-41465089)
chr2 (18-105)||(45093261-45093344)
chr2 (54-105)||(16058521-16058572)
chr2 (18-81)||(19898943-19899006)
chr2 (26-97)||(29689340-29689408)
chr2 (18-106)||(36690932-36691020)
chr2 (59-102)||(41464901-41464944)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-102)||(492669-492753)
[»] chr7 (7 HSPs)
chr7 (18-105)||(23992062-23992149)
chr7 (18-102)||(27425865-27425949)
chr7 (18-105)||(22326858-22326945)
chr7 (18-105)||(17611842-17611929)
chr7 (18-105)||(8307525-8307612)
chr7 (38-105)||(19479441-19479508)
chr7 (20-96)||(41405828-41405904)
[»] chr6 (5 HSPs)
chr6 (18-96)||(7646886-7646964)
chr6 (19-101)||(25935512-25935594)
chr6 (26-105)||(17366850-17366929)
chr6 (19-73)||(12607173-12607227)
chr6 (19-96)||(29487628-29487705)
[»] scaffold0132 (2 HSPs)
scaffold0132 (26-96)||(545-615)
scaffold0132 (26-96)||(8505-8575)
[»] scaffold0188 (1 HSPs)
scaffold0188 (68-105)||(15977-16014)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 41633304 - 41633047
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctcaatttatatata 117  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41633304 gaattgtggcaagtagtgcattgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacattgctcaatttatatata 41633205  T
Q  118 --gatagatactaatgtggctattaaactaaacttcatcatctaatttttctaccgagataatctttatgtaggggtgttaacggggtgtgcccgtgcca 215  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41633204 tagatagatactaatgtggctattaaactaaacttcatcatctaatttttctaccgagataatctttatgtaggggtgttaacggggtgtgcccgtgcca 41633105  T
Q  216 aagccacaaaaagttgacgggttaacaaattaacttcccaaaaaccggccccagcaat 273  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41633104 aagtcacaaaaagttgacgggttaacaaattaacttcccaaaaaccggccccagcaat 41633047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 42457118 - 42457263
Alignment:
Q  119 atagatactaatgtggctattaaactaaacttcatcatctaatttttctaccgagataatctttatg-taggggtgttaacggggtgtgcccgtgccaaa 217  Q
    ||||||| |||||||| |||||||||||||||||||   |||||||| ||||||||| ||||||||  | ||||||||||||||||||||||||||||||    
T  42457118 atagatattaatgtggttattaaactaaacttcatc---taatttttttaccgagatgatctttatactgggggtgttaacggggtgtgcccgtgccaaa 42457214  T
Q  218 gccacaaaaagttgacgggttaacaaattaacttcccaaaaaccggccc 266  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  42457215 gccacaaaaagttgaaggattaacaaattaacttcccaaaaaccggccc 42457263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 18375502 - 18375589
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18375502 gaattgtggcaaatagtgcattgtgattgaccgcactttattcttgaagaattcttgatgttatttttctagagatataacattgctc 18375589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 24683163 - 24683076
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  24683163 gaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgctc 24683076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 26179322 - 26179409
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||  |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26179322 gaattgtgttaaatagtgcactgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacattgctc 26179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 17847664 - 17847736
Alignment:
Q  33 gtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||||    
T  17847664 gtgcattatgattgactgctttttaatcttgaagaattttttatgttatttttctagagatatagcattgctc 17847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 47281652 - 47281735
Alignment:
Q  22 tgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||    | | |||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  47281652 tgtggcaaatagtgcattgtgatttgtcgttctttattcttgaagaattcttgatgttatttttctagacatataacattgctc 47281735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 37674112 - 37674185
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagag 91  Q
    ||||||| | ||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  37674112 gaattgtagtaaatagtacattgtgattgactgctctttagtcttgaagaattcttgatgttatttttctagag 37674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 41878406 - 41878321
Alignment:
Q  20 attgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||| ||||||||||||||||||||| ||| | ||||||| |||||||||| | |||||||||||||| ||||| ||||||||||    
T  41878406 attgtagcaaatagtgcattgtgattggctgatctttattcatgaagaattcatgatgttatttttctatagatacaacattgctc 41878321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 4098532 - 4098580
Alignment:
Q  57 attcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4098532 attcttgaagaattcttgatgttatttttctagagatataacattgctc 4098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 54021358 - 54021432
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacatt 101  Q
    |||||||||| ||||||||||||||||| |||||||        |||||||| ||||||||||||||||| ||||||||||||    
T  54021358 aattgtggcacatagtgcattgtgattggctgcttt--------gaagaatttttaatgttatttttctaaagatataacatt 54021432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 30509027 - 30508940
Alignment:
Q  20 attgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctcaa 107  Q
    |||| ||||||||||| ||||| |||||||||| ||||||||||||||  || | ||| |   ||||||||||||||||| |||||||    
T  30509027 attgcggcaaatagtgtattgtaattgactgctctttattcttgaagagatcatgatgctccctttctagagatataacactgctcaa 30508940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 47839055 - 47839102
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaag 66  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  47839055 aattgtggcaaatagtacattgtggttgactgctctttattcttgaag 47839102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 23348228 - 23348316
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgtta-tttttctagagatataacattgctc 105  Q
    ||||| ||| |||||||| ||||||||||| || | ||||||||| ||||||| || |||||| ||||| || ||||||| ||||||||    
T  23348228 gaattatggtaaatagtgtattgtgattgagtgttctttattcttaaagaattattgatgttattttttttaaagatatagcattgctc 23348316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 54358154 - 54358102
Alignment:
Q  53 ttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||||   || |||| |||||||||||||||||||||||||||||    
T  54358154 ttttattcttgaaatttttttaaagttatttttctagagatataacattgctc 54358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 266
Target Start/End: Original strand, 33055906 - 33056056
Alignment:
Q  114 tatagatagatactaatgtggctattaaactaaacttcatcatctaatttttctaccgagataatctttatg-taggggtgttaacggggt-gtgcccgt 211  Q
    ||||||||||||||||||||  | ||||| |||||||||||   |||||||||||| ||||||||||||||  |||||||||||||||||| ||||||||    
T  33055906 tatagatagatactaatgtgatt-ttaaattaaacttcatc---taatttttctacggagataatctttataataggggtgttaacggggttgtgcccgt 33056001  T
Q  212 gccaaagccacaaaaagttgacgggttaacaaattaacttcccaaaaaccggccc 266  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33056002 gccaaagccacaaaaagttgactggttaacaaattaacttcccaaaaaccggccc 33056056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 41322607 - 41322528
Alignment:
Q  27 caaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||| |||||||||    
T  41322607 caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttaaagatatagcattgctca 41322528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 4851819 - 4851733
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||| |||||||||||| |||||||||||| ||||||||| || ||||||| |||||||||||||||||||||| ||||||||    
T  4851819 aattgtggaaaatagtgcattatgattgactgctctttattcttaaaaaattcttgatgttatttttctagagatatagcattgctc 4851733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 29314085 - 29314008
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    ||||||||||||||||||||||||||||||| || ||||||||| || ||||||| ||||||||||||||||||||||    
T  29314085 aattgtggcaaatagtgcattgtgattgacttctctttattcttaaacaattcttgatgttatttttctagagatata 29314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 34392194 - 34392107
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||| ||||||| ||||||||||| |||||||||| |||| ||||    
T  34392194 aattgtggcaaatagtacattgtgattgagtgctctttattcttgaaaaattcttgatgttatttttttagagatatagcattcctca 34392107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 39112735 - 39112658
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatat 95  Q
    ||||| |||||||||||||||||||||||  |||| |||||| ||||||||||||| |||||||||||||||||||||    
T  39112735 gaattatggcaaatagtgcattgtgattggttgctctttatttttgaagaattcttgatgttatttttctagagatat 39112658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 8551575 - 8551489
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||| | |||||||||||||  || | |||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  8551575 aattgtggcaaacaatgcattgtgattggttgttctttattctcgaagaattcttaatgttatttttttagagatatagcattgctc 8551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 36473162 - 36473226
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttattt 83  Q
    ||||||| ||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||    
T  36473162 aattgtgtcaaatagtgtactgtgattgactgctctttattcttgaagaattcttgatgttattt 36473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 1005675 - 1005596
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataac 98  Q
    ||||||| ||||| ||||||| | ||||| | || ||||||||| ||||||| ||||| |||||||||||||||||||||    
T  1005675 aattgtgtcaaatggtgcattataattgattactctttattctttaagaatttttaatattatttttctagagatataac 1005596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 3607115 - 3607036
Alignment:
Q  26 gcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||| | || ||||||||||| |||||||||||||||   || || |||||||||||||||||||||| ||||||||    
T  3607115 gcaaatactacactgtgattgactactttttattcttgaaatttttttgatgttatttttctagagatatagcattgctc 3607036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 4794206 - 4794159
Alignment:
Q  20 attgtggcaaatagtgcattgtgattgactgctttttattcttgaaga 67  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  4794206 attgtggcaaatagtgcattgtgattggctgctatttattcttgaaga 4794159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 11653822 - 11653894
Alignment:
Q  18 gaattgtggcaaatagtgcatt----gtgattgactgctttttattcttgaagaattcttaatgttatttttc 86  Q
    ||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||| ||||||||||||    
T  11653822 gaattgtggcaaatagtacattatgattgattgactgctctttattcttgaagaattcttgatgttatttttc 11653894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 11643369 - 11643324
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttga 64  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  11643369 aattgtggtaaatagtgcattgtgattgactgctctttattcttga 11643324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 33888942 - 33888865
Alignment:
Q  28 aaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttat-ttttctagagatataacattgct 104  Q
    ||||| |||||||||||||| || | ||||||||| ||||||| |||||||||| |||| ||||||||| ||||||||    
T  33888942 aaataatgcattgtgattgagtgttctttattcttaaagaatttttaatgttattttttttagagatatgacattgct 33888865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 1196553 - 1196506
Alignment:
Q  59 tcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    |||| |||||||||| |||||||||||||||||||||| |||||||||    
T  1196553 tcttaaagaattcttgatgttatttttctagagatatagcattgctca 1196506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 2001733 - 2001680
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattctt 73  Q
    ||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||    
T  2001733 aattgtggcaaatcgtgtatt-tgattgactgctctttattcttgaagaattctt 2001680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 15562026 - 15562114
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||||| ||||||  ||||||||| | ||||||||| ||   || || ||||||||||||| ||||||||  ||||||||    
T  15562026 gaattgtggcaaataatgcattacgattgactgttatttattcttaaaatttttttgatgttatttttcttgagatatagaattgctca 15562114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 32891261 - 32891173
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32891261 gaattgtggcaaatagtgcattgtgattggctgctttttattcttgaagaattcttgatgttatttttctagagatataacattgctca 32891173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 4391957 - 4392045
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||| |||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  4391957 gaattgtggcaaacagtgcattgtaattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacatttctca 4392045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 11739331 - 11739417
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgct 104  Q
    ||||||||||||| |||||||| |||||  |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  11739331 gaattgtggcaaacagtgcattatgattacctgctttttattcttgaagaattcttgatgttatttttctaaagatataacattgct 11739417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 35672431 - 35672504
Alignment:
Q  28 aaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacatt 101  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  35672431 aaatagtgcattgtgattgactgctctttattcttgaaaaattcttaatgttatttttctagaaatataacatt 35672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 8692595 - 8692511
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattg 102  Q
    ||||||||||||||||| |||| ||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8692595 gaattgtggcaaatagtacattatgattggatgctatttattcttgaagaattcttgatgttatttttctagagatataacattg 8692511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 228110 - 228023
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||| |||||||||||||||||||| || | |||||||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  228110 gaattgtggtaaatagtgcattgtgattgattgttctttattcttgaaaaattcttgatgttatttttctagagatatatcattgctc 228023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 37094023 - 37094106
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacatt 101  Q
    ||||||| ||||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  37094023 gaattgttgcaaatagtacaatgtgattgactgctctttattcttgaagaattgttgatgttatttttctagagatataacatt 37094106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 3456839 - 3456773
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttt 84  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  3456839 gaattgtggcaaatagtgcattgtgagtgactgctctttattcttgaagaattcgtaatgttatttt 3456773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 34286679 - 34286594
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||||| |||| || ||||||||||| ||||||||||| |||||||    
T  34286679 aattgtggcaaatagtgcatcgtgattggctgctttt-attcttgaataattattgatgttatttttttagagatataatattgctc 34286594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 28434287 - 28434210
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    |||||||| |||||||||||||| |||| ||||| |||||| || ||||||||| |||||||||||||||||||||||    
T  28434287 aattgtggtaaatagtgcattgtaattggctgctctttatttttaaagaattctcaatgttatttttctagagatata 28434210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 41326560 - 41326647
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||| |||||||  ||||||||||| ||||| ||||||||||||||  || | |||||||||||||||||||||| ||||||||    
T  41326560 gaattgtgtcaaatagcacattgtgattggctgctctttattcttgaagagatcgtgatgttatttttctagagatatagcattgctc 41326647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 29223550 - 29223465
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||| || ||||||||||| ||||||| || |||||    
T  29223550 gaattgtggcaaatagtgcattgtggttgactgc-tcttatt-ttgaagaattcttgatattatttttctaaagatatagcactgctc 29223465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 38614292 - 38614384
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattctt---gaagaattcttaatgttatttttcta-gagatataacattgctca 106  Q
    |||||||||||| ||||||||||||||||   ||| |||||||||   ||||||||||| ||||||||||||||  |||||||||||||||||    
T  38614292 gaattgtggcaattagtgcattgtgattgggcgctctttattcttgaagaagaattcttgatgttatttttctattagatataacattgctca 38614384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 31644715 - 31644658
Alignment:
Q  28 aaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttattttt 85  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||    
T  31644715 aaatagtgcattgtgattggctgctctttattcttgaagaattattgatgttattttt 31644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 42148906 - 42148869
Alignment:
Q  68 attcttaatgttatttttctagagatataacattgctc 105  Q
    |||||| || ||||||||||||||||||||||||||||    
T  42148906 attcttgatattatttttctagagatataacattgctc 42148869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 43141563 - 43141523
Alignment:
Q  61 ttgaagaattcttaatgttatttttctagagatataacatt 101  Q
    ||||||||||||| ||| |||||||||||||| ||||||||    
T  43141563 ttgaagaattcttgatgctatttttctagagaaataacatt 43141523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 29095634 - 29095722
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29095634 gaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacattgctca 29095722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 20809034 - 20808946
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  20809034 gaattgtggcaaataatgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgctca 20808946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 31032813 - 31032895
Alignment:
Q  22 tgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgct 104  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  31032813 tgtggcaaatagtgcattgtgattgactgatctttattcttgaagaattcttgatgatatttttctagagatataacattgct 31032895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 34475986 - 34475899
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  34475986 gaattggggcagatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgctc 34475899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 41646660 - 41646576
Alignment:
Q  20 attgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| | ||||||||    
T  41646660 attgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattc-tgatgttatttttctagagatacagcattgctc 41646576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 1270258 - 1270175
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacatt 101  Q
    ||||||||||||||||||||||| |||||  |||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  1270258 gaattgtggcaaatagtgcattgagattggttgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 1270175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 42480208 - 42480121
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||| ||||| | |||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  42480208 gaattgtggtaaataatacattgtaattgactgctatttattcttgaagaattcttgatgttatttttgtagagatataacattgctc 42480121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 4194853 - 4194767
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgct 104  Q
    ||||| ||| |||||||  |||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  4194853 gaattatggtaaatagtatattgtgattgactgttctttattcttgaagaattcttgatgttatttttctagagatatagcattgct 4194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 9098684 - 9098766
Alignment:
Q  24 tggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||| |||| ||||    
T  9098684 tggcagatagtgcattgtgattggctgctctttattcttaaagaattcttgatgttatttttctagagatatatcattactca 9098766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 34808013 - 34807936
Alignment:
Q  28 aaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||| |||||||    
T  34808013 aaatagtacattgtgattgactgctctttatttttgaagaattcttgatgttatttttcgagagatataaaattgctc 34807936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 24135840 - 24135755
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||  ||||||||    
T  24135840 gaattgtggcaaat--tgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcttgagatatgtcattgctc 24135755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 16254940 - 16254855
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||| ||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||| | |||||||| |||||||    
T  16254940 aattatggcaaatagtgcattgtgattggctgatctttattcttgaagaattctt-atgttatttttccaaagatataatattgctc 16254855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 47550877 - 47550791
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||| |||  ||||| ||||||||||||   || |||||||||||||| |||||||||  ||||||||    
T  47550877 aattgtggcaaatagtgcattgtaatttgctgctctttattcttgaaatttttttaatgttatttttatagagatattgcattgctc 47550791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 7167455 - 7167523
Alignment:
Q  37 attgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||||| | |||||||||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  7167455 attgtgattgactgttctttattcttgaagaattcttgacgttatttttttagaaatatagcattgctc 7167523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 44714920 - 44714960
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttat 58  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  44714920 gaattgtggcaaataatgcattgtgattgactgctctttat 44714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 50663818 - 50663730
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttat-ttttctagagatataacattgctc 105  Q
    ||||||||| ||||| |||||| | ||| |||||| |||||||||| | |||| || ||||||| |||| |||||||||| ||||||||    
T  50663818 gaattgtggtaaataatgcattatcattcactgctctttattcttgtaaaatttttgatgttattttttttagagatatagcattgctc 50663730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 27143671 - 27143746
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagata 94  Q
    |||||| ||||||| | ||||||||||||| ||||||||||||| ||||  |  | || |||||||||||||||||    
T  27143671 aattgtagcaaataatacattgtgattgacggctttttattcttaaagagatggtgatattatttttctagagata 27143746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 48148875 - 48148828
Alignment:
Q  20 attgtggcaaatagtgcattgtgattgactgctttttattcttgaaga 67  Q
    ||||||| ||||||||||||| ||||||||| | ||||||||||||||    
T  48148875 attgtggaaaatagtgcattgggattgactggtctttattcttgaaga 48148828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 2958833 - 2958869
Alignment:
Q  69 ttcttaatgttatttttctagagatataacattgctc 105  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  2958833 ttcttgatgttatttttctagagatatagcattgctc 2958869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 45166313 - 45166225
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  45166313 gaattgtggcaaatagtgcattgtgattggctgctctttattattgaagaattcttgatgttatttttctagagatataacattgctca 45166225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 50612986 - 50613072
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgct 104  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  50612986 gaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgct 50613072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 1561367 - 1561455
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  1561367 gaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaattcttgatgttatttttctagagatataacactgctca 1561455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 23643091 - 23643179
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  23643091 gaattgtggcaaatagtgcattgtgattgactaatatttattcttgaagaattcttgatgttatttttctagagatacaacattgctca 23643179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 31788392 - 31788305
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  31788392 gaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatatcattgctc 31788305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 36517601 - 36517514
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||| ||||||||    
T  36517601 gaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttgtctagatatatagcattgctc 36517514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 38176501 - 38176594
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctcaattta 111  Q
    |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  38176501 gaattgaggcaaatagtgcattgcgattggctgctctttattcttgaagaattcttgatgatatttttctagagatataacattgctcatttta 38176594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 521876 - 521963
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||| ||||| ||||||||    
T  521876 gaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttatctagatatatagcattgctc 521963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 34624589 - 34624674
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  34624589 aattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattctt-atgttatttttctagagatatagcattgctc 34624674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 39145338 - 39145254
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattg 102  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||| |||||||||| || ||||||||||||||||||| |||||    
T  39145338 gaattgtagcaaatagtgcattgtaattggctgctttttattcttaaagaattcttgatattatttttctagagatatagcattg 39145254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 52546829 - 52546731
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctcaatttatatat 116  Q
    |||||||| |||||||  ||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||| |||| ||| |||| |||||    
T  52546829 gaattgtgacaaatagcacattgtgattggctgctctttattcttgaagaatttttgatgttatttttctaaagatatatcattactctatttttatat 52546731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 20912245 - 20912177
Alignment:
Q  27 caaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatat 95  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| || ||||||    
T  20912245 caaatagtgcattgttattgactgctctttattcttgaagaattcttgatgttatttttttaaagatat 20912177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 51297137 - 51297219
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacatt 101  Q
    ||||||||||||||||||||||||| ||| ||| | ||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  51297137 gaattgtggcaaatagtgcattgtggttggctgttctttatgcttgaag-actcttgatgttatttttctagagatataacatt 51297219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 43203318 - 43203248
Alignment:
Q  35 gcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||| ||||| |||||| ||||||||||||| ||||||||||| |||| ||||| ||||||||    
T  43203318 gcattgtgattggctgctctttatttttgaagaattcttgatgttatttttttagaaatatagcattgctc 43203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 544685 - 544634
Alignment:
Q  54 tttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||  |||||||||||||||||||||  |||||||    
T  544685 tttattcttgaagaattcttggtgttatttttctagagatataggattgctc 544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 11358937 - 11358880
Alignment:
Q  49 tgctttttattcttgaagaattctta-atgttatttttctagagatataacattgctc 105  Q
    |||| ||||||| ||||||||| ||  |||||||||||||||||||||| ||||||||    
T  11358937 tgctctttattcgtgaagaatttttttatgttatttttctagagatatagcattgctc 11358880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 9496615 - 9496567
Alignment:
Q  20 attgtggcaaatagtgcattgtgattgactgctttttattcttgaagaa 68  Q
    ||||||||||| |||| |||||||||| || || |||||||||||||||    
T  9496615 attgtggcaaacagtgaattgtgattggctactctttattcttgaagaa 9496567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 2752745 - 2752832
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  2752745 gaattgtggcaaatagtgcattgtgattggctgctattttttcttgaagaattcttaatgttatttttctagaaatatatcattgctc 2752832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 13686080 - 13685992
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||||    
T  13686080 gaattgtggcaagtagtgcattgtgattggctgctctttattcttgaaaaattcttgatgttatttttctagagatatagcattgctca 13685992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 42263918 - 42263834
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattg 102  Q
    |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42263918 gaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacattg 42263834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 28716451 - 28716538
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||| | || || |||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  28716451 gaattgtggcaaatagtgcattgtgatcggctactatttattcttgaagaattcttgatgtcatttttctagagatataacattgctc 28716538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 35676389 - 35676470
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataaca 99  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||    
T  35676389 gaattgtggcaaatagtgcattgtggttgactgctctttattcttaaagaattcttgatgttatttttttagagatataaca 35676470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 23454372 - 23454468
Alignment:
Q  18 gaattgtggcaaat-agtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctcaatttata 113  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||| ||| |||||||    
T  23454372 gaattgtgtcaaattagtgcattgtgattgactgctctttattcttgaagaattttttatgttatttttctagagatatagcattactctatttata 23454468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 14941100 - 14941169
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttct 87  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  14941100 gaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattattgatgttatttttct 14941169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 25415000 - 25414934
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttt 84  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  25415000 gaattgtggcaaatagtgcattgtgattgactgttctttattcttgaagaattcttgatgttatttt 25414934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 3810381 - 3810453
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctaga 90  Q
    |||||||||||||||||||||||| |||| || || ||||||||||||||||| |||||||||||||||||||    
T  3810381 gaattgtggcaaatagtgcattgtaattggctactctttattcttgaagaattattaatgttatttttctaga 3810453  T

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Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 35323587 - 35323674
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||| || |||||||||||||| | ||||| || |||||    
T  35323587 gaattgtggcaaatagtgtattgtgattgactgttctttattcttgaagaatttttgatgttatttttctataaatatagcactgctc 35323674  T

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Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 28429367 - 28429281
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||| ||||||||| ||||||||| ||| ||||| |||||||||||||||||||| || ||||||||||| ||||||| ||||||||    
T  28429367 aattatggcaaataatgcattgtgtttggctgctctttattcttgaagaattcttgatattatttttctaaagatatagcattgctc 28429281  T

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Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 41465011 - 41465089
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    |||||| ||||||||||||||||||||   ||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  41465011 gaattgcggcaaatagtgcattgtgatccgctgcactttattcttgaagaattcttgatgttatttttctagagatata 41465089  T

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Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 45093261 - 45093344
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||||||||||||||||||||    || ||||||||||||||||| || |||||||||||||||||||||| || |||||    
T  45093261 gaattgtggcaaatagtgcattgtgattg----ctctttattcttgaagaattattgatgttatttttctagagatatagcactgctc 45093344  T

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Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 16058521 - 16058572
Alignment:
Q  54 tttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16058521 tttattcttgaagaattcttaatgttatttttctagagatatagcattgctc 16058572  T

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Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 19899006 - 19898943
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttat 81  Q
    |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  19899006 gaattgtgacaaataatgcattgtgattggctgctctttattcttgaagaattcttaatgttat 19898943  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 29689340 - 29689408
Alignment:
Q  26 gcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataa 97  Q
    ||||||||||||||||||||   |||| ||||||||| || ||||||| |||||||||||||||||||||||    
T  29689340 gcaaatagtgcattgtgatt---tgctctttattcttaaaaaattcttgatgttatttttctagagatataa 29689408  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 36690932 - 36691020
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctca 106  Q
    ||||||||||||||| || ||| | ||||  || |||||||| |||||||||| || ||||||| ||| ||||||||||||||||||||    
T  36690932 gaattgtggcaaatactgtattataattggatgttttttatttttgaagaatttttgatgttatatttttagagatataacattgctca 36691020  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 41464944 - 41464901
Alignment:
Q  59 tcttgaagaattcttaatgttatttttctagagatataacattg 102  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||    
T  41464944 tcttgaaaaattcttgatgttatttttctagagaaataacattg 41464901  T

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Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 492753 - 492669
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattg 102  Q
    |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  492753 gaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacattg 492669  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 23992062 - 23992149
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  23992062 gaattgtggcaaatagtgcattgtgataggctgctctttattcttgaagaattcttgatgttatatttgtagagatataacattgctc 23992149  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 27425865 - 27425949
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattg 102  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||| |||||||||||||| ||||||| |||||    
T  27425865 gaattgtggcaaataatgcattgtgattgactgttctttattctttaagaattcttgatgttatttttctaaagatatagcattg 27425949  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 22326945 - 22326858
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||| |||||||||||||| ||||||| || |||||    
T  22326945 gaattgtggcaaatagtacattgtgattgacggctctttcttcttgaagaattcttgatgttatttttctaaagatatagcactgctc 22326858  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 17611929 - 17611842
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    ||||||||||||||| | |||| ||||||  || | |||||||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  17611929 gaattgtggcaaataattcattatgattggttgttctttattcttgaagaattcttgatgttatttttctagcgatatagcattgctc 17611842  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 8307612 - 8307525
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||| ||||||||||| |||||||||  | ||||||||| || ||||||| |||||||||||||||| ||| | ||||||||    
T  8307612 gaattgtggctaatagtgcattatgattgactcgtctttattcttaaaaaattcttgatgttatttttctagatatacagcattgctc 8307525  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 19479508 - 19479441
Alignment:
Q  38 ttgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||| | || |||||| |||||||||| || |||||||||||||||||||||| ||||||||    
T  19479508 ttgtgattgattactctttatttttgaagaatttttgatgttatttttctagagatatagcattgctc 19479441  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 41405828 - 41405904
Alignment:
Q  20 attgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    ||||||||||||||||||||||||  |||| || ||||||||||||||  || | || ||  |||||||||||||||    
T  41405828 attgtggcaaatagtgcattgtgaccgactcctctttattcttgaagagatcgtgatattccttttctagagatata 41405904  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 7646886 - 7646964
Alignment:
Q  18 gaattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    ||||||||||||||||||||||||||||| ||||| |||||| || |||||||||| ||||||||||||||||||||||    
T  7646886 gaattgtggcaaatagtgcattgtgattggctgctctttatttttaaagaattcttgatgttatttttctagagatata 7646964  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 25935594 - 25935512
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacatt 101  Q
    ||||||| |||||||| |||| |||||   |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  25935594 aattgtgacaaatagtacattatgattagatgctctttattcttgaataattcttaatgttatttttctagagatataacatt 25935512  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 17366929 - 17366850
Alignment:
Q  26 gcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatataacattgctc 105  Q
    |||||||||||| |||||||  ||| | |||||||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  17366929 gcaaatagtgcagtgtgattagctgttctttattcttgaaaaattcttaatgttgtttttctagagatatagcattgctc 17366850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 12607173 - 12607227
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattctt 73  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  12607173 aattgtggcaaatagtgcactgtgattgactgctctttattcttgaagaattctt 12607227  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 29487628 - 29487705
Alignment:
Q  19 aattgtggcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    ||||||||||||||||||| ||||||||||| || ||||||||| ||||  || | || ||| ||||||||| |||||    
T  29487628 aattgtggcaaatagtgcaatgtgattgactactctttattctttaagatgtcgtgatattacttttctagatatata 29487705  T

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Target: scaffold0132 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 615 - 545
Alignment:
Q  26 gcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||    
T  615 gcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatata 545  T

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Target: scaffold0132; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 8575 - 8505
Alignment:
Q  26 gcaaatagtgcattgtgattgactgctttttattcttgaagaattcttaatgttatttttctagagatata 96  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||    
T  8575 gcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatata 8505  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 15977 - 16014
Alignment:
Q  68 attcttaatgttatttttctagagatataacattgctc 105  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  15977 attcttgatgttatttttctaaagatataacattgctc 16014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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