View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_14 (Length: 266)
Name: NF3969_low_14
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 36514407 - 36514602
Alignment:
| Q |
49 |
catattaaacacacacaatatatattcgagattagtttgttgagagttgtttacagttagtttataggtagttaa----gttagttaactttttcatcat |
144 |
Q |
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| T |
36514407 |
catattaaacacacacaatatatattcgagattagtttgttgagagttgtttacaggtagttaa--gttagttaacgttgttagttaactttttcatcat |
36514504 |
T |
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| Q |
145 |
ttcatatagacttgtatgcataataaaatttcattatgtccatcgtaattcagttgataaaaacatcgataatatttattcataagttttctatatta |
242 |
Q |
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| T |
36514505 |
ttcatatagacttatatgcataataaaatttcattatgtccatcgtaattcagttgataaaaacatcgataatatttattcataagttttctatatta |
36514602 |
T |
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