View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_16 (Length: 251)
Name: NF3969_low_16
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39863148 - 39863386
Alignment:
| Q |
1 |
cgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863148 |
cgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagttttt |
39863247 |
T |
|
| Q |
101 |
caagcttggctttaagatcagcaatttgagcatcaagagaattgcgttgtgtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39863248 |
caagcttggctttaagatcagcaatttgagcatcaagagagttgcgttgtgtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtcttgt |
39863347 |
T |
|
| Q |
201 |
ctccttcaatgcttcattatcttggtcagtgctttcctt |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39863348 |
ctccttcaatgcttcattatcttggtcagtgctttcctt |
39863386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39846231 - 39846463
Alignment:
| Q |
1 |
cgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagttttt |
100 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| || ||||||||||||| |
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| T |
39846231 |
cgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaacaattttggctctttccccttgtagttttt |
39846330 |
T |
|
| Q |
101 |
caagcttggctttaagatcagcaatttgagcatcaagagaattgcgttgtgtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtcttgt |
200 |
Q |
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| T |
39846331 |
caagcatggctttaagatcagcaatctgagtatcaagagagttgagttctgtttggtggatgtcgagggaagtctttgacaacaatattttttgtcttgt |
39846430 |
T |
|
| Q |
201 |
ctccttcaatgcttcattatcttggtcagtgct |
233 |
Q |
| |
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| |||||||| | |||||||| ||||| ||||| |
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| T |
39846431 |
cgccttcaattcctcattatcctggtcggtgct |
39846463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39855949 - 39856181
Alignment:
| Q |
1 |
cgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagttttt |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||| || | ||| ||||||||||||| |
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| T |
39855949 |
cgatggaaaattgatttaacttcattgttaaaagatgtgatcttatctttctcttgatcttgaatctcagccattttagcccggtcgccttgtagttttt |
39856048 |
T |
|
| Q |
101 |
caagcttggctttaagatcagcaatttgagcatcaagagaattgcgttgtgtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtcttgt |
200 |
Q |
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||||||||||||| | ||||||||| || |||||||| ||| |||||||||| |||| ||||||| | | ||| ||| |||| | |||||||||| |
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| T |
39856049 |
caagcttggctttgatatcagcaatccgaatgtcaagagacttgagttgtgtttggtggtctgtgaggcacgcctttgagatcaaaaaattttgtcttgc |
39856148 |
T |
|
| Q |
201 |
ctccttcaatgcttcattatcttggtcagtgct |
233 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
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| T |
39856149 |
ctccttcaatgcttcattattttggtcagtgct |
39856181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38980996 - 38980770
Alignment:
| Q |
1 |
cgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagttttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| | |||| || |||||| || ||| |||||||||||| |
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| T |
38980996 |
cgatggaaaattgatttaacttctttgtttaaagatgcgatcttatctttctctttatcttgaccctcagtaactttggccctctcaacttgtagttttt |
38980897 |
T |
|
| Q |
101 |
caagcttggc---tttaagatcagcaatttgagcatcaagagaattgcgttgtgtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtct |
197 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| | ||| |||| ||||||||||||||| | ||||| | ||| |||||||||||||||| |
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| T |
38980896 |
caagcttggcattattaagatcagcaatctgagcatcaagaaagttgagttggttttgatggtttgtgaagaaagtccttgagatcaatattttttgtct |
38980797 |
T |
|
| Q |
198 |
tgtctccttcaatgcttcattatcttg |
224 |
Q |
| |
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||| || |||||||||| ||||||||| |
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| T |
38980796 |
tgtttctttcaatgctttattatcttg |
38980770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 39909969 - 39910101
Alignment:
| Q |
1 |
cgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagttttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||| | | || | |||||||||||||||||| |
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| T |
39909969 |
cgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctcttgatcttgaatcttaacgatgat-----tgtcaccttgtagttttt |
39910063 |
T |
|
| Q |
101 |
caagcttggctttaagatcagcaatttgagcatcaaga |
138 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| |
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| T |
39910064 |
caagcttggcattaagatcagcaatctgagcatcaaga |
39910101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 39738123 - 39737915
Alignment:
| Q |
4 |
tggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagtttttcaa |
103 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||| |
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| T |
39738123 |
tggaaaattgacttaacatctttattcaaagatgtaatcttatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagtttt---- |
39738028 |
T |
|
| Q |
104 |
gcttggctttaagatcagcaatttgagcatcaagagaattgcgttgtgtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtcttgtctc |
203 |
Q |
| |
|
||||| |||||||||||||| ||| ||| |||||| | |||||| | ||||||| | ||| |||||||||| ||||| || || |
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| T |
39738027 |
-----------------gcaatctgagcatcaagagagttgagttctgtttggtcgtttgtaaaggaagtcattgagttcaatattttctgtctggtttc |
39737945 |
T |
|
| Q |
204 |
cttcaatgcttcattatcttggtcagtgct |
233 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
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|
| T |
39737944 |
cttcaatgcttcactatcttggtcagtgct |
39737915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 53495721 - 53495633
Alignment:
| Q |
18 |
aacttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagtttttcaagct |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||| |||| || | | |||||| || |||||||||||||||||||||| |
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| T |
53495721 |
aacttctttgttcaaagatgtgatcttatctttttcttgatcttgaatcacagccagtttggccctttcaccttgtagtttttcaagct |
53495633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 53495602 - 53495551
Alignment:
| Q |
180 |
ggtcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtg |
231 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
53495602 |
ggtcaatattttttgtcttgtcacctacaatgcttcattatcttggccagtg |
53495551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 14329361 - 14329413
Alignment:
| Q |
10 |
attgatttaacttctttgttaaaagatgtgatcttatctt-tctcttgatctt |
61 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||| |||||||||||| |
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|
| T |
14329361 |
attgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatctt |
14329413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 14422371 - 14422423
Alignment:
| Q |
10 |
attgatttaacttctttgttaaaagatgtgatcttatctt-tctcttgatctt |
61 |
Q |
| |
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||||||||||||| | |||| ||||||||||||||||||| |||||||||||| |
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|
| T |
14422371 |
attgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatctt |
14422423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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