View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_18 (Length: 249)
Name: NF3969_low_18
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43357820 - 43358046
Alignment:
| Q |
1 |
cttactaaaaggtccaactttttccactcctcaactctgaactttacattcgaaaaagacataa-gtttttatgtcgtttattagaagtatactttcatg |
99 |
Q |
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| T |
43357820 |
cttactaaaaggtccaactttttccactcctcaactctgaattttacattcgaaaaagacataaagtttttatgtcgttta---gaagtatactttcata |
43357916 |
T |
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| Q |
100 |
ccnnnnnnnttgtannnnnnncctatgaaagtatatttcccaaatcatgtataagtatcactaaaacctaggatgtgtttgatttttatatcttgttgta |
199 |
Q |
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| T |
43357917 |
ccaaaaaaattgtatttttttcctatgaaagtatatttcccaaatcatgtataagtatcactaaaacctaggatgtgtttgatttttatatcttgttgta |
43358016 |
T |
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| Q |
200 |
atatagtgtatttaatttacctaagacatg |
229 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
43358017 |
atatagtgtatttaatttaccttagacatg |
43358046 |
T |
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