View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_20 (Length: 240)
Name: NF3969_low_20
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39863136 - 39862910
Alignment:
| Q |
1 |
atcaaatcaaattgaaaagtgttgaagataaaatcccggaggcgcaaactgaattggaaagtcatgagaaggtctacagaatcttcagggcaatccctcc |
100 |
Q |
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| T |
39863136 |
atcaaatcaaattgaaaagtgttgaagataaaatcccggaggcgcaaactgaattggaaagtcatgagaaggtctacagaatcttcagggcaatccctcc |
39863037 |
T |
|
| Q |
101 |
attttgatttgtgtatttgcttggccttgtttgactaatctttccaatttaatattatcaagtataattatttatgtnnnnnnnnngtataattatcggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
39863036 |
attttgatttgtgtatttgcttggccttgtttgactaatctttccaatttaatattatcaagtataattatttatgtcaaaaaaaagtataattatcgat |
39862937 |
T |
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| Q |
201 |
accttacagtatatgcaagtagtattt |
227 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
39862936 |
acctgacagtatatgcaagtagtattt |
39862910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 39846192 - 39846097
Alignment:
| Q |
31 |
aaatcccggaggcgcaaactgaattggaaagtcatgagaaggtctacagaatcttcagggcaatccctccattttgatttgtgtatttgcttggcc |
126 |
Q |
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|||| |||||||| |||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
39846192 |
aaattccggaggccgaaactgaattggaaggtcatgagaaggtctacaaaaccttgagggcaatccctccattttgattcatgtatttgcttggcc |
39846097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 39855937 - 39855810
Alignment:
| Q |
1 |
atcaaatcaaattgaaaagtgttgaagataaaatcccggaggcgcaaactgaattggaaagtcatgagaaggtctacagaatcttcagggcaatccctcc |
100 |
Q |
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|||||||||| ||||| || |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| ||| | |||| ||| ||||| |
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| T |
39855937 |
atcaaatcaagttgaagagcgttgaagataaaatcctggaggcacaaactgaattggaaaggcatgagaaggtctaccaaataatgagggtaatgcctcc |
39855838 |
T |
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| Q |
101 |
attttgatttgtgtatttgcttggcctt |
128 |
Q |
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||||||||| |||| || ||||||||| |
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| T |
39855837 |
attttgattaatgtacttacttggcctt |
39855810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 39738138 - 39738266
Alignment:
| Q |
1 |
atcaaatcaaattgaaaagtgttg-aagataaaatcccggaggcgcaaactgaattggaaagtcatgagaaggtctacagaatcttcagggcaatccctc |
99 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||| ||||| | ||| ||||||||||| || |||||||| ||| |||||||| | |||||||| |
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| T |
39738138 |
atcaaatcaagttgaaaagtgttggaagatcaaattccggaaactcaatctgaattggaaggttatgagaagctctttcaaatcttcaagaaaatccctc |
39738237 |
T |
|
| Q |
100 |
cattttgatttgtgtatttgcttggcctt |
128 |
Q |
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||||||||||| |||||||| || ||||| |
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| T |
39738238 |
cattttgatttatgtatttggttagcctt |
39738266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 39846022 - 39845987
Alignment:
| Q |
192 |
attatcggtaccttacagtatatgcaagtagtattt |
227 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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|
| T |
39846022 |
attatcgttaccttacagtatatgcaagtagtattt |
39845987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38981008 - 38981036
Alignment:
| Q |
1 |
atcaaatcaaattgaaaagtgttgaagat |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38981008 |
atcaaatcaaattgaaaagtgttgaagat |
38981036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 53495741 - 53495836
Alignment:
| Q |
1 |
atcaaatcaaattgaaaagtgttgaagataaaatcccggaggcgcaaactgaattggaaagtcatgagaaggtctacagaatcttcagggcaatccc |
97 |
Q |
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|||||||||| |||||| |||||||| | |||||| | ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53495741 |
atcaaatcaagttgaaa-gtgttgaatacaaaatctctgaggccgaaactaaattggaaagtcacgagaaggtctacagaatcttcagggcaatccc |
53495836 |
T |
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