View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3969_low_22 (Length: 211)

Name: NF3969_low_22
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3969_low_22
NF3969_low_22
[»] chr2 (5 HSPs)
chr2 (25-127)||(8288917-8289019)
chr2 (25-70)||(31667922-31667967)
chr2 (25-70)||(4199322-4199367)
chr2 (25-70)||(7088073-7088118)
chr2 (165-193)||(7086725-7086753)
[»] chr4 (7 HSPs)
chr4 (25-115)||(36518585-36518675)
chr4 (25-70)||(35306939-35306984)
chr4 (165-193)||(31905777-31905805)
chr4 (165-193)||(31906531-31906559)
chr4 (165-193)||(35305869-35305897)
chr4 (165-193)||(35307049-35307077)
chr4 (165-193)||(44802857-44802885)
[»] chr8 (2 HSPs)
chr8 (25-70)||(24953970-24954015)
chr8 (25-75)||(40844012-40844062)
[»] chr7 (5 HSPs)
chr7 (25-70)||(26403994-26404039)
chr7 (25-70)||(27251660-27251705)
chr7 (25-70)||(43655232-43655277)
chr7 (25-70)||(46890458-46890503)
chr7 (25-70)||(46890837-46890882)
[»] chr6 (3 HSPs)
chr6 (25-70)||(7684766-7684811)
chr6 (25-70)||(31157484-31157529)
chr6 (25-70)||(31154138-31154183)
[»] chr5 (3 HSPs)
chr5 (25-70)||(2496963-2497008)
chr5 (25-70)||(33406039-33406084)
chr5 (165-193)||(33406179-33406207)
[»] chr3 (6 HSPs)
chr3 (25-70)||(49003630-49003675)
chr3 (25-70)||(49081656-49081701)
chr3 (25-70)||(51799363-51799408)
chr3 (28-70)||(49082073-49082115)
chr3 (165-193)||(39505122-39505150)
chr3 (165-193)||(42596770-42596798)
[»] chr1 (1 HSPs)
chr1 (25-70)||(49911961-49912006)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 8289019 - 8288917
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattatgaataaaataattactatgtctttattcattattatctgtatttaaaatgtaaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |    
T  8289019 atgaataagataattagtgttttaaaattaaatatatcatcattatgaataaaataattactatgtatttattcattattatttgtatttataatgtaca 8288920  T
Q  125 aat 127  Q
    |||    
T  8288919 aat 8288917  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 31667967 - 31667922
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  31667967 atgaataaaataattagtgttttaaaattaaatatatcatcattat 31667922  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 4199367 - 4199322
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  4199367 atgaataaaataattagtgtttttaaattaaatatatcatcattat 4199322  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 7088073 - 7088118
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||    
T  7088073 atgaataaaataattggtgtttttaaattaaatatatcatcattat 7088118  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 7086753 - 7086725
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  7086753 tcagtcccgccatttcaaatggcggtaat 7086725  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 36518585 - 36518675
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattatgaataaaataattactatgtctttattcattattatctgtattta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  36518585 atgaataagataattagtgttttaaaattaaatatatcatcattatgaataaaataattactatgtatttattcattattatttgtattta 36518675  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 35306939 - 35306984
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  35306939 atgaataaaataattagtgtttttaaattaaatatatcatcattat 35306984  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 31905805 - 31905777
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  31905805 tcagtcccgccatttcaaatggcggtaat 31905777  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 31906531 - 31906559
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  31906531 tcagtcccgccatttcaaatggcggtaat 31906559  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 35305897 - 35305869
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  35305897 tcagtcccgccatttcaaatggcggtaat 35305869  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 35307049 - 35307077
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  35307049 tcagtcccgccatttcaaatggcggtaat 35307077  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 44802885 - 44802857
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  44802885 tcagtcccgccatttcaaatggcggtaat 44802857  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 24953970 - 24954015
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  24953970 atgaataaaataattagtgtttttaaattaaatatatcatcattat 24954015  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 40844062 - 40844012
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattatgaata 75  Q
    |||||||| |||||||||| ||| |||||||||| ||||||||||| ||||    
T  40844062 atgaataaaataattagtgcttttaaattaaataaatcatcattatcaata 40844012  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 26404039 - 26403994
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  26404039 atgaataaaataattagtgtttttaaattaaatatatcatcattat 26403994  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 27251705 - 27251660
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  27251705 atgaataaaataattagtgtttttaaattaaatatatcatcattat 27251660  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 43655232 - 43655277
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  43655232 atgaataaaataattagtgtttttaaattaaatatatcatcattat 43655277  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 46890503 - 46890458
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  46890503 atgaataaaataattagtgtttttaaattaaatatatcatcattat 46890458  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 46890837 - 46890882
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  46890837 atgaataaaataattagtgtttttaaattaaatatatcatcattat 46890882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 7684811 - 7684766
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  7684811 atgaataaaataattagtgtttttaaattaaatatatcatcattat 7684766  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 31157484 - 31157529
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  31157484 atgaataaaataattagtgtttttaaattaaatatatcatcattat 31157529  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 31154183 - 31154138
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||    
T  31154183 atgaataaaataattattgtttttaaattaaatatatcatcattat 31154138  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 2496963 - 2497008
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  2496963 atgaataaaataattagtgtttttaaattaaatatatcatcattat 2497008  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 33406039 - 33406084
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  33406039 atgattaaaataattagtgtttttaaattaaatatatcatcattat 33406084  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 33406179 - 33406207
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  33406179 tcagtcccgccatttcaaatggcggtaat 33406207  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 49003675 - 49003630
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  49003675 atgaataaaataattagtgtttttaaattaaatatatcatcattat 49003630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 49081701 - 49081656
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  49081701 atgaataaaataattagtgtttttaaattaaatatatcatcattat 49081656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 51799363 - 51799408
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  51799363 atgaataaaataattagtgtttttaaattaaatatatcatcattat 51799408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 49082073 - 49082115
Alignment:
Q  28 aataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    ||||| |||||||||||||| ||||||||||||||||||||||    
T  49082073 aataaaataattagtgtttttaaattaaatatatcatcattat 49082115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 39505150 - 39505122
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  39505150 tcagtcccgccatttcaaatggcggtaat 39505122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 42596770 - 42596798
Alignment:
Q  165 tcagtcccgccatttcaaatggcggtaat 193  Q
    |||||||||||||||||||||||||||||    
T  42596770 tcagtcccgccatttcaaatggcggtaat 42596798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 49912006 - 49911961
Alignment:
Q  25 atgaataagataattagtgttttaaaattaaatatatcatcattat 70  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||||    
T  49912006 atgaataaaatagttagtgtttttaaattaaatatatcatcattat 49911961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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