View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_3 (Length: 396)
Name: NF3969_low_3
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 34971464 - 34971830
Alignment:
| Q |
20 |
atactgatttttattctatggtgaataatggaagaaatgttagtcctagacaatctaactttggaagtttaggttttgatgaggaaagtggtgttgctaa |
119 |
Q |
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| T |
34971464 |
atactgatttttattctatggtgaataatggaagaaatgttagtcctagacaatctaactttggaagtttaggttttgatgaggaaagtggtgttgctaa |
34971563 |
T |
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| Q |
120 |
agctaatggaaatggtggaaatggctaccctgctcctcatagtgcagggattttttcacctgtggctaataagaaaaagggtcatggtggtggtgctggt |
219 |
Q |
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| T |
34971564 |
agctaatggaaatggtggaaatggctaccctgctcctcatagtgcagggattttttcacctgtggctaataagaaaaagggtcatggtggtggtgctggt |
34971663 |
T |
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| Q |
220 |
gatggtggaaaagatcttcatatgtttgtttggagttcaagtgcttcacctgtttctgaaggtggaatccatgtctttagaggtggtggtgattatggaa |
319 |
Q |
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| T |
34971664 |
gatggtggaaaagatcttcatatgtttgtttggagttcaagtgcttcacctgtttctgaaggtggaatccatgtctttagaggtggtggtgattatggaa |
34971763 |
T |
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| Q |
320 |
atgatcagcttaatggagtagctcaccaaaaaggttttgttttttgactctttgatttgcccctttg |
386 |
Q |
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| T |
34971764 |
atgatcagcttaatggagtagctcaccaaaaaggttttgttttttgactctttgatttgcccctttg |
34971830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 25039576 - 25039624
Alignment:
| Q |
230 |
aagatcttcatatgtttgtttggagttcaagtgcttcacctgtttctga |
278 |
Q |
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| T |
25039576 |
aagatcttcatatgtttgtttggagttctagtgcttcacctgtctctga |
25039624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 52717275 - 52717315
Alignment:
| Q |
241 |
atgtttgtttggagttcaagtgcttcacctgtttctgaagg |
281 |
Q |
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| T |
52717275 |
atgtttgtttggagttcaagtgcttcacctgtttctgaagg |
52717315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 45362641 - 45362687
Alignment:
| Q |
232 |
gatcttcatatgtttgtttggagttcaagtgcttcacctgtttctga |
278 |
Q |
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| T |
45362641 |
gatcttcatatgtttttttggagttcaagtgattcccttgtttctga |
45362687 |
T |
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