View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3969_low_5 (Length: 393)

Name: NF3969_low_5
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3969_low_5
NF3969_low_5
[»] chr3 (8 HSPs)
chr3 (7-383)||(40400591-40400997)
chr3 (218-349)||(13705946-13706079)
chr3 (220-349)||(3103087-3103218)
chr3 (31-110)||(3103259-3103338)
chr3 (31-110)||(13705828-13705907)
chr3 (344-383)||(3103038-3103077)
chr3 (344-383)||(13706089-13706128)
chr3 (132-190)||(19163460-19163516)
[»] chr8 (15 HSPs)
chr8 (200-349)||(32754533-32754683)
chr8 (31-206)||(43904279-43904451)
chr8 (31-206)||(32754702-32754871)
chr8 (1-110)||(42421115-42421224)
chr8 (218-349)||(42421265-42421400)
chr8 (224-326)||(43904486-43904589)
chr8 (58-110)||(20305416-20305468)
chr8 (58-110)||(21092049-21092101)
chr8 (140-206)||(22894009-22894073)
chr8 (238-282)||(22893758-22893802)
chr8 (58-110)||(44412001-44412053)
chr8 (344-383)||(32754484-32754523)
chr8 (344-383)||(42421410-42421449)
chr8 (344-383)||(43904615-43904654)
chr8 (58-100)||(22894104-22894146)
[»] chr7 (10 HSPs)
chr7 (31-346)||(35716207-35716539)
chr7 (224-349)||(28999217-28999344)
chr7 (218-349)||(34785471-34785604)
chr7 (31-110)||(34785354-34785433)
chr7 (262-349)||(20655907-20655996)
chr7 (31-108)||(28999385-28999462)
chr7 (58-110)||(40119933-40119985)
chr7 (344-383)||(28999168-28999207)
chr7 (344-383)||(34785614-34785653)
chr7 (344-382)||(35716156-35716194)
[»] chr6 (7 HSPs)
chr6 (199-349)||(11194691-11194839)
chr6 (218-349)||(14400601-14400734)
chr6 (1-110)||(14400453-14400562)
chr6 (31-110)||(13090742-13090821)
chr6 (215-349)||(13090857-13090993)
chr6 (131-206)||(11194598-11194673)
chr6 (344-383)||(13091003-13091042)
[»] chr2 (13 HSPs)
chr2 (218-349)||(29391405-29391538)
chr2 (218-349)||(22546658-22546791)
chr2 (218-349)||(45224132-45224265)
chr2 (217-349)||(43959406-43959537)
chr2 (1-106)||(22546833-22546938)
chr2 (31-110)||(29391577-29391656)
chr2 (215-349)||(16939353-16939487)
chr2 (215-349)||(17010018-17010152)
chr2 (31-110)||(45224017-45224096)
chr2 (1-110)||(43959535-43959636)
chr2 (60-110)||(16939519-16939569)
chr2 (60-110)||(17010184-17010234)
chr2 (344-383)||(45224275-45224314)
[»] chr1 (13 HSPs)
chr1 (218-349)||(6600446-6600579)
chr1 (218-348)||(42939137-42939269)
chr1 (218-349)||(22339389-22339522)
chr1 (1-110)||(25467770-25467879)
chr1 (218-346)||(25467593-25467728)
chr1 (31-110)||(42939018-42939097)
chr1 (131-206)||(16932346-16932421)
chr1 (31-110)||(6600326-6600403)
chr1 (55-110)||(22339562-22339617)
chr1 (60-110)||(16932437-16932487)
chr1 (302-349)||(16932217-16932264)
chr1 (344-383)||(25467541-25467580)
chr1 (344-379)||(6600589-6600624)
[»] chr5 (8 HSPs)
chr5 (224-349)||(26628353-26628479)
chr5 (218-349)||(23550759-23550892)
chr5 (218-349)||(30220752-30220884)
chr5 (31-206)||(26628149-26628318)
chr5 (31-110)||(30220632-30220711)
chr5 (31-110)||(23550640-23550719)
chr5 (344-383)||(26628489-26628528)
chr5 (349-383)||(30220899-30220933)
[»] scaffold0024 (2 HSPs)
scaffold0024 (218-349)||(157201-157334)
scaffold0024 (31-110)||(157081-157160)
[»] chr4 (4 HSPs)
chr4 (218-349)||(42364033-42364166)
chr4 (218-349)||(11276090-11276223)
chr4 (60-110)||(42364208-42364258)
chr4 (65-110)||(11276006-11276051)
[»] scaffold0368 (2 HSPs)
scaffold0368 (218-348)||(4694-4826)
scaffold0368 (31-110)||(4575-4654)
[»] scaffold0583 (3 HSPs)
scaffold0583 (218-349)||(5245-5378)
scaffold0583 (31-110)||(5128-5206)
scaffold0583 (344-383)||(5388-5427)
[»] scaffold0743 (3 HSPs)
scaffold0743 (31-110)||(2791-2870)
scaffold0743 (241-349)||(2902-3004)
scaffold0743 (344-383)||(3014-3053)
[»] scaffold0252 (1 HSPs)
scaffold0252 (130-205)||(18179-18256)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 40400997 - 40400591
Alignment:
Q  7 gttgcggtgtgagacagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtc 106  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  40400997 gttgcggtgtgagatagcggtgctatagcggcgcaacacttcgtagcagttttgcgatttagaatcgctatttcattttaagagaaaatacaaaattgtc 40400898  T
Q  107 cttgannnnnnnnnnnnnnnnnngagggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttac-------- 198  Q
    ||||                    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||            
T  40400897 cttg--gtttttttaaaagaaacaagggtatttttgacatttttatcaaaccctaaaaagttcagcttctctcttccttcttttattcttacgcaaaatc 40400800  T
Q  199 ----------gcaaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctc 288  Q
              |||||| |||  |||||| ||||||||||||||| |||||||||||||||||| || |||| ||||||||| | |||||||||||||||     
T  40400799 gtgtttatctgcaaaatgcaccttctctctgcttttctgctgttctgtgaaacttcttcacctttgctgtatatcttcctc-attttgtcgtgtttgctt 40400701  T
Q  289 tgttatcatgtta-ttttttgtttaataatctcaaactctgttgtcctgttac--------------ttttttgttattattgattccaaactccattat 373  Q
    ||||||| ||||| |||||||||||| ||||||||| | ||||||||||||||              |||||||||||||||||||||||||||||||||    
T  40400700 tgttatcctgttatttttttgtttaacaatctcaaaatttgttgtcctgttacttttttgttctagtttttttgttattattgattccaaactccattat 40400601  T
Q  374 gctctctctg 383  Q
    ||||||||||    
T  40400600 gctctctctg 40400591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 13705946 - 13706079
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  13705946 tgcttttctgctgttttgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 13706045  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| ||||| |||||||||||||||||||||||    
T  13706046 tctcaaaactttgttgtcctgttacttttttgtt 13706079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 220 - 349
Target Start/End: Complemental strand, 3103218 - 3103087
Alignment:
Q  220 cttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatc 318  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||    
T  3103218 cttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgttttctctgttatcctgttatttttttgtttaacaatc 3103119  T
Q  319 tc-aaactctgttgtcctgttacttttttgtt 349  Q
    || |||| | ||| ||||||||||||||||||    
T  3103118 tcaaaaccccgttttcctgttacttttttgtt 3103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 3103338 - 3103259
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3103338 atagcggcgcaacgcttcgtagcggttttgcagtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 3103259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 13705828 - 13705907
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13705828 atagcggcgcaacgcttcgtagtggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 13705907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 3103077 - 3103038
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  3103077 tttgttattattgattccaaactccattctgctctctctg 3103038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 13706089 - 13706128
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  13706089 tttgttattattgattccaaactccattctgctctctctg 13706128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 19163516 - 19163460
Alignment:
Q  132 gggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttc 190  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||  ||||||||||||    
T  19163516 gggtatttttgacattttcatcgaaccctaaataattcagcttct--cttccttctttc 19163460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 200 - 349
Target Start/End: Complemental strand, 32754683 - 32754533
Alignment:
Q  200 caaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgt 299  Q
    |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  32754683 caaaacacatcttctctctgcttttctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgt 32754584  T
Q  300 tatt-ttttgtttaataatctcaaactctgttgtcctgttacttttttgtt 349  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  32754583 tatttttttgtttaacaatctcaaactctgttgtcctgttacttttttgtt 32754533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 43904279 - 43904451
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnng 130  Q
    |||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |    
T  43904279 atagcggcacaacactttgtagcggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg---gttttaaaaaaaaagag 43904375  T
Q  131 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43904376 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctctcttccttctttcattcttacgcaaaacg 43904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 32754871 - 32754702
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnng 130  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||                        
T  32754871 atagcggcgcaac-cttcgtagcggttttgtggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttggttttaaaaaaaaaca---- 32754777  T
Q  131 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32754776 agggtatttttgacattt-catcaaaccctaaaaagttcagcttctctcttccttctttcattcttacgcaaaacg 32754702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 42421115 - 42421224
Alignment:
Q  1 catagcgttgcggtgtgagacagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaa 100  Q
    |||| ||||||||||||||| ||| | |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  42421115 cataacgttgcggtgtgagatagcagcgctatagcggcgcaacacttcgtagcggttttgcggtttagaaccgcaatttcattttaagagaaaatacaaa 42421214  T
Q  101 attgtccttg 110  Q
    ||||||||||    
T  42421215 attgtccttg 42421224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 42421265 - 42421400
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatttt---ttgtttaat 314  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||| ||||||||||| ||||||||| ||||||| |||||||||   ||||||||     
T  42421265 tgcttttctgctgttctgtaaaacttattcacctctgctgtaaatctttctctactttgttgtgtttgctttgttatcctgttattttttgttgtttaac 42421364  T
Q  315 aatctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||||| |||||||||||||||||||||||||||||    
T  42421365 aatctcaaaactctgttgtcctgttacttttttgtt 42421400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 43904486 - 43904589
Alignment:
Q  224 tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaa 322  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||| ||||||||    
T  43904486 tctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgttcgctcagttatcctgttatttttttgtttaacaatctcaa 43904585  T
Q  323 actc 326  Q
    ||||    
T  43904586 actc 43904589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 20305468 - 20305416
Alignment:
Q  58 ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  20305468 ttgcggtttagaaccactattacattttaagagaaaatacaaaattgtccttg 20305416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 21092101 - 21092049
Alignment:
Q  58 ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  21092101 ttgcggtttagaaccactattacattttaagagaaaatacaaaattgtccttg 21092049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 22894073 - 22894009
Alignment:
Q  140 ttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 206  Q
    ||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||||||||||    
T  22894073 ttgacattttcatcaaaccttataaagttcagcttc-ca-ttccttctttcattcttacgcaaaacg 22894009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 22893802 - 22893758
Alignment:
Q  238 aaacttcttcacctctgatgtaaatcttcctctactttgtcgtgt 282  Q
    |||||| |||||||||| |||||||||||||||||||||||||||    
T  22893802 aaactttttcacctctgctgtaaatcttcctctactttgtcgtgt 22893758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 44412001 - 44412053
Alignment:
Q  58 ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||| |||| |||||||||| ||||||||||||||||||| |||||||||||    
T  44412001 ttgcgttttaaaaccgctattacattttaagagaaaatacacaattgtccttg 44412053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 32754523 - 32754484
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  32754523 tttgttattattgattccaaactccattctgctctctctg 32754484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 42421410 - 42421449
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  42421410 tttgttattattgattccaaactccattattctctctctg 42421449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 43904615 - 43904654
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  43904615 tttgttattattgattccaaactccattctgctttctctg 43904654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 22894146 - 22894104
Alignment:
Q  58 ttgcggtttagaaccgctatttcattttaagagaaaatacaaa 100  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  22894146 ttgcgatttagcaccgctattacattttaagagaaaatacaaa 22894104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 346
Target Start/End: Complemental strand, 35716539 - 35716207
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnng 130  Q
    ||||| |||||||||||||||||  ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||                        
T  35716539 atagcagcgcaacgcttcgtagcgattttgtggtttagaactgctatttcactttaagagaaaatacaaaattgtccttggttttaaaaaaaaaca---- 35716444  T
Q  131 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg------------------catatt 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||||                  ||| ||    
T  35716443 agggtatttttgacattttcattaaaccctaaaaagttcagcttctctcttccttctttctttcttgcgcaaaacggcgtttatctgcaaaaagcatctt 35716344  T
Q  213 ctctttgcttttctgctgttttgtgaaacttcttcacctctgat--gtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgt 309  Q
    |||| ||||||||||||||| ||| ||||||||||||||||     ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  35716343 ctctctgcttttctgctgttctgtaaaacttcttcacctctacaccgtaaatcttcctctactttgtcgtgtttgctttgttatcctgttatttttttgt 35716244  T
Q  310 ttaataatctcaaactctgttgtcctgttactttttt 346  Q
    |||| |||||||||||||  |||||||||||||||||    
T  35716243 ttaacaatctcaaactctactgtcctgttactttttt 35716207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 224 - 349
Target Start/End: Complemental strand, 28999344 - 28999217
Alignment:
Q  224 tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctc-a 321  Q
    |||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |    
T  28999344 tctgcttttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaatctcaa 28999245  T
Q  322 aactctgttgtcctgttacttttttgtt 349  Q
    ||||||||||||||||||||||||||||    
T  28999244 aactctgttgtcctgttacttttttgtt 28999217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 34785471 - 34785604
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    |||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||    
T  34785471 tgctttgctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa 34785570  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| ||||||||||||||||||||| |||||||    
T  34785571 tctcaaaactctgttgtcctgttactattttgtt 34785604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 34785354 - 34785433
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34785354 atagcggcgcaacgcttcgtagcgattttgcagtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 34785433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 20655996 - 20655907
Alignment:
Q  262 tcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataatctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  20655996 tcttcctctactttgtcgcgtttgctctgttatcctgttatttttttgtttaacaatctcaaaactctgttgtcctgttacttttttgtt 20655907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 28999462 - 28999385
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtcct 108  Q
    ||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28999462 atagcagcgcaacgctttgtagcggttttgcagtttagaaccgctatttcattttaagagaaaatacaaaattgtcct 28999385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 40119985 - 40119933
Alignment:
Q  58 ttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||| |||||||||| |||| ||||||||| ||||||||||||||||    
T  40119985 ttgcggtttaaaaccgctattacattctaagagaaattacaaaattgtccttg 40119933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 28999207 - 28999168
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  28999207 tttgttattattgattccaaactccattctgctctctctg 28999168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 34785614 - 34785653
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  34785614 tttgttattattgattccaaactccattctgctctctctg 34785653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 35716194 - 35716156
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctct 382  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  35716194 tttgttattattgattccaaactccattctgctctctct 35716156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 199 - 349
Target Start/End: Original strand, 11194691 - 11194839
Alignment:
Q  199 gcaaaacgcatattctctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatg 298  Q
    |||||||| || |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  11194691 gcaaaacgtatcttctctctgcttttctgctgttctgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctg 11194790  T
Q  299 tta-ttttttgtttaataatctcaaactctgttgtcctgttacttttttgtt 349  Q
    ||| |||||||||||| ||||||||||||   |||||| |||||||||||||    
T  11194791 ttatttttttgtttaacaatctcaaactc---tgtcctattacttttttgtt 11194839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 14400601 - 14400734
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||  ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||    
T  14400601 tgcttttctgctgttctggaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa 14400700  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| ||||||| |||||||||||||||||||||    
T  14400701 tctcaaaactctattgtcctgttacttttttgtt 14400734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 14400453 - 14400562
Alignment:
Q  1 catagcgttgcggtgtgagacagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaa 100  Q
    ||||| ||||||||||||||  | || |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14400453 catagtgttgcggtgtgagatggtggagctatagcggcgcaacccttcgtagcagttttgcggtttagaaccgctatttcattttaagagaaaatacaaa 14400552  T
Q  101 attgtccttg 110  Q
    ||||||||||    
T  14400553 attgtccttg 14400562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 13090742 - 13090821
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13090742 atagcggcgcaacgcttcgtagcggttttgcggtttagaactgctatttcattttaagagaaaatacaaaattgtccttg 13090821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 215 - 349
Target Start/End: Original strand, 13090857 - 13090993
Alignment:
Q  215 ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaa 313  Q
    |||||||||| ||||||| |   ||||||||||| || || |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  13090857 ctttgcttttttgctgttctacaaaacttcttcatctttgctgtaaatcttcctctactttgtcgtgtttgctctgttattctgttatttttttgtttaa 13090956  T
Q  314 taatctc-aaactctgttgtcctgttacttttttgtt 349  Q
     |||||| ||||| ||||||| |||||||||||||||    
T  13090957 caatctcaaaactttgttgtcttgttacttttttgtt 13090993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 11194598 - 11194673
Alignment:
Q  131 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 206  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  11194598 agggtattttttacattttcatcaaatcctaaaaagtttagcttctctcttccttctttcattcttacgcaaaacg 11194673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 13091003 - 13091042
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  13091003 tttgttattattgattccaaactccattctgctctctctg 13091042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 29391538 - 29391405
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 316  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  29391538 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 29391439  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| |||||||||||||||||||||||||||||    
T  29391438 tctcaaaactctgttgtcctgttacttttttgtt 29391405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 22546791 - 22546658
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 316  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| ||    
T  22546791 tgcttttctgctgttctgttaaacttcttcacttctgctgtaaatcttcctctactttgtcgtgtttactctgttatcctgttatttttttgtttaacaa 22546692  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| |||||||||||||||||||||||||||||    
T  22546691 tctcaaaactctgttgtcctgttacttttttgtt 22546658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 45224132 - 45224265
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||| ||    
T  45224132 tgcttttctgctgttctgtaaaacttcttcacctctgttgtaaatcttcctctgctttgtcgtgtttgctctgttaccctgttatttttttgtttaacaa 45224231  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| |||||||||||||||||||||||||||||    
T  45224232 tctcaaaactctgttgtcctgttacttttttgtt 45224265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 43959537 - 43959406
Alignment:
Q  217 ttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaata 315  Q
    |||||||||||||||| ||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |    
T  43959537 ttgcttttctgctgttctgtaaaacttcttcacctctg---taaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaaca 43959441  T
Q  316 atctc-aaactctgttgtcctgttacttttttgtt 349  Q
    ||||| |||||||||||||||||||||||||||||    
T  43959440 atctcaaaactctgttgtcctgttacttttttgtt 43959406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22546938 - 22546833
Alignment:
Q  1 catagcgttgcggtgtgagacagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaa 100  Q
    |||||||||||||||||||| ||||| |||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  22546938 catagcgttgcggtgtgagatagcggcgctatagcagtgcaacgcttcgtggcggttttgcggtttagaaccgctatttcattttaagagaaactacaaa 22546839  T
Q  101 attgtc 106  Q
    ||||||    
T  22546838 attgtc 22546833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 29391656 - 29391577
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29391656 atagcggcgcaatgcttcgtagcggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 29391577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 215 - 349
Target Start/End: Complemental strand, 16939487 - 16939353
Alignment:
Q  215 ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttt-tgtttaa 313  Q
    |||||||||| || |||| |||  ||||| |||||||||| ||||||||||||||||||||||||||||||  || ||||| |||||||||| |||||||    
T  16939487 ctttgcttttttgatgttctgtataactttttcacctctgttgtaaatcttcctctactttgtcgtgtttg--ctattatcctgttatttttgtgtttaa 16939390  T
Q  314 taatctca-aactctgttgtcctgttacttttttgtt 349  Q
     ||||||| ||||||||||||||||||||||| ||||    
T  16939389 caatctcagaactctgttgtcctgttacttttgtgtt 16939353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 215 - 349
Target Start/End: Complemental strand, 17010152 - 17010018
Alignment:
Q  215 ctttgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttt-tgtttaa 313  Q
    |||||||||| || |||| |||  ||||| |||||||||| ||||||||||||||||||||||||||||||  || ||||| |||||||||| |||||||    
T  17010152 ctttgcttttttgatgttctgtataactttttcacctctgttgtaaatcttcctctactttgtcgtgtttg--ctattatcctgttatttttgtgtttaa 17010055  T
Q  314 taatctca-aactctgttgtcctgttacttttttgtt 349  Q
     ||||||| ||||||||||||||||||||||| ||||    
T  17010054 caatctcagaactctgttgtcctgttacttttgtgtt 17010018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 45224017 - 45224096
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45224017 atagcggcgcaacgcttcacagcggttttgtggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 45224096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 43959636 - 43959535
Alignment:
Q  1 catagcgttgcggtgtgagacagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaa 100  Q
    |||||||||||||||||||| ||  | ||||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  43959636 catagcgttgcggtgtgagatagaagcgctatagcggcgcaaggcttcgtagc--------ggtttagaaccgctatttcattttaagagaaaatacaaa 43959545  T
Q  101 attgtccttg 110  Q
    ||||||||||    
T  43959544 attgtccttg 43959535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 16939569 - 16939519
Alignment:
Q  60 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16939569 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 16939519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 17010234 - 17010184
Alignment:
Q  60 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17010234 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 17010184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 45224275 - 45224314
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  45224275 tttgttattattgattccaaactccattctgctctctctg 45224314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 6600446 - 6600579
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  6600446 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 6600545  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| |||||||||||||||||||||||||||||    
T  6600546 tctcaaaactctgttgtcctgttacttttttgtt 6600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 218 - 348
Target Start/End: Original strand, 42939137 - 42939269
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  42939137 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatattcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 42939236  T
Q  317 tctc-aaactctgttgtcctgttacttttttgt 348  Q
    |||| ||||||||||||||||||||||||||||    
T  42939237 tctcaaaactctgttgtcctgttacttttttgt 42939269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 22339522 - 22339389
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 316  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  22339522 tgcttttcttctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 22339423  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| ||||| |||||||||||||||||||||||    
T  22339422 tctcaaaactttgttgtcctgttacttttttgtt 22339389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25467879 - 25467770
Alignment:
Q  1 catagcgttgcggtgtgagacagcggtgctatagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaa 100  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  25467879 catagcgttgcagtgtgagatagcggcgctatagcggcgcaacgcttcgtagtggttttgcggtttagaaccgctatttcattttaagagaaaatacaaa 25467780  T
Q  101 attgtccttg 110  Q
    ||||||||||    
T  25467779 attgtccttg 25467770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 25467728 - 25467593
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctcta-----ctttgtcgtgtttgctctgttatcatgtta-ttttttgttt 311  Q
    ||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||     |||||||||||||||||||||||| ||||| ||||||||||    
T  25467728 tgcttttctgctgttctgtaaaacttcttaacctttgctgtaaatcttcctctactttactttgtcgtgtttgctctgttatcctgttatttttttgttt 25467629  T
Q  312 aataatctc-aaactctgttgtcctgttactttttt 346  Q
    || |||||| ||||||||||||||||||||||||||    
T  25467628 aacaatctcaaaactctgttgtcctgttactttttt 25467593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 42939018 - 42939097
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42939018 atagcggcgcaacgcttcgtagcggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaagtgtccttg 42939097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 16932421 - 16932346
Alignment:
Q  131 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 206  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  16932421 agggtattttttacattttcatcaaatcctaaaaagtttagcttctctcttccttctttcattcttacgcaaaacg 16932346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 6600326 - 6600403
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  6600326 atagtggcgcaacgcttcgtagcggttttgcggttt-gaaccgctatttcatttt-agagaaaatacaaaattgtccttg 6600403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 22339617 - 22339562
Alignment:
Q  55 gttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22339617 gttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 22339562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 16932487 - 16932437
Alignment:
Q  60 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  16932487 gcggtttggaaccactattacattttaagagaaaatacaaaattgtccttg 16932437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 16932264 - 16932217
Alignment:
Q  302 ttttttgtttaataatctcaaactctgttgtcctgttacttttttgtt 349  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  16932264 ttttttgtttaacaatctcatactctgttgtcctattacttttttgtt 16932217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 25467580 - 25467541
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  25467580 tttgttattattgattccaaactccattctgctctctctg 25467541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 6600589 - 6600624
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctc 379  Q
    |||||||||||||||||||||||||||| |||||||    
T  6600589 tttgttattattgattccaaactccattctgctctc 6600624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 26628353 - 26628479
Alignment:
Q  224 tctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataatctcaa 322  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | ||| ||    
T  26628353 tctgctgttttgtgaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttgtcctgttatttttttgtttaacattcttaa 26628452  T
Q  323 actctgttgtcctgttacttttttgtt 349  Q
    |||||||||||||||||||||||||||    
T  26628453 actctgttgtcctgttacttttttgtt 26628479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 23550759 - 23550892
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  23550759 tgcttttctgctgttctgtaaaacttattcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaataa 23550858  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| ||| |||||||| ||||||||||||||||    
T  23550859 tctcaaaattctgttgttctgttacttttttgtt 23550892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 30220752 - 30220884
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  30220752 tgcttttctgctgttctgtaaaactt-ttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 30220850  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| |||||||| ||||||||||||||||||||    
T  30220851 tctcaaaactctgatgtcctgttacttttttgtt 30220884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 31 - 206
Target Start/End: Original strand, 26628149 - 26628318
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttgannnnnnnnnnnnnnnnnng 130  Q
    ||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||                        
T  26628149 atagcggtgcaacgcttggtagcggttttgcggtttagaactgctatttcattttaagagaaaataccaaattgtccttg------gtttaaaaaaaaca 26628242  T
Q  131 agggtatttttgacattttcatcaaaccctaaaaagttcagcttctcacttccttctttcattcttacgcaaaacg 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  26628243 agggtatttttaacattttcatcaaaccctaaaaagttcagcttcgctcttccttctttcattcttatgcaaaacg 26628318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 30220632 - 30220711
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30220632 atagctgcgcaacgcttcgtagcggttttacggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 30220711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 23550640 - 23550719
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||| |||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23550640 atagcggcgcaatgcttaggagcggttttgcagtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 23550719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 26628489 - 26628528
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  26628489 tttgttattattgattccaaactccattctgctatctctg 26628528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 30220899 - 30220933
Alignment:
Q  349 tattattgattccaaactccattatgctctctctg 383  Q
    ||||||||||||||||||||||| |||||||||||    
T  30220899 tattattgattccaaactccattctgctctctctg 30220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 157201 - 157334
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  157201 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaaaaa 157300  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| ||||| |||||||||||||||||||||||    
T  157301 tctcaaaactttgttgtcctgttacttttttgtt 157334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 157081 - 157160
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  157081 atagtggcgcaacgcttcgtagcggttttgaggtctagaaccgctatttcattttaagagaaaatacaaaattgtccttg 157160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 42364166 - 42364033
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttatt-ttttgtttaataa 316  Q
    ||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||    
T  42364166 tgcttttctgctgttctgtaaaactttttcacctctgctgtaaatcttcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 42364067  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| |||||||||||||||||||||||||||||    
T  42364066 tctcaaaactctgttgtcctgttacttttttgtt 42364033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 11276090 - 11276223
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||  |||||||| ||||| ||||| |||||||||||| ||    
T  11276090 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatcttcctctacttcgtcgcatttgctctattatcttgttatttttttgtttaacaa 11276189  T
Q  317 tctca-aactctgttgtcctgttacttttttgtt 349  Q
    ||||| ||||||||||| ||||||||||||||||    
T  11276190 tctcataactctgttgttctgttacttttttgtt 11276223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 42364258 - 42364208
Alignment:
Q  60 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42364258 gcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 42364208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 11276006 - 11276051
Alignment:
Q  65 ttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||    
T  11276006 ttagaaccgctatttcgtttcaagagaaaatacaaaattgtccttg 11276051  T

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Target: scaffold0368 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 218 - 348
Target Start/End: Original strand, 4694 - 4826
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||    
T  4694 tgcttttctgctgttctgtaaaacttcttcacctctgctgtaaatattcctctactttgtcgtgtttgctctgttatcctgttatttttttgtttaacaa 4793  T
Q  317 tctc-aaactctgttgtcctgttacttttttgt 348  Q
    |||| ||||||||||||||||||||||||||||    
T  4794 tctcaaaactctgttgtcctgttacttttttgt 4826  T

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Target: scaffold0368; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 4575 - 4654
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4575 atagcggcgcaacgcttcgtagcggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaagtgtccttg 4654  T

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Target: scaffold0583 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 218 - 349
Target Start/End: Original strand, 5245 - 5378
Alignment:
Q  218 tgcttttctgctgttttgtgaaacttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgtta-ttttttgtttaataa 316  Q
    ||||||| |||| || ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||    
T  5245 tgcttttttgctattctgtaaaacttcttcacctctgctgtaaatcttcctctactttgtcttgtttgctctgttatcctgttatttttttgtttaacaa 5344  T
Q  317 tctc-aaactctgttgtcctgttacttttttgtt 349  Q
    |||| ||||| ||||||| |||||||||||||||    
T  5345 tctcaaaactatgttgtcttgttacttttttgtt 5378  T

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Target: scaffold0583; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 5128 - 5206
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||    
T  5128 atagcggcgcaacggtttgtagctgttttgcggtctagaactgctatttcattttaa-agaaaatacaaaattgtccttg 5206  T

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Target: scaffold0583; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 5388 - 5427
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  5388 tttgttattattgattccaaactccattctgctctctctg 5427  T

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Target: scaffold0743 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 2791 - 2870
Alignment:
Q  31 atagcggcgcaacgcttcgtagctgttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 110  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2791 atagcggcgcaaggcttcgtagcggttttgcggtttagaaccgctatttcattttaagagaaaatacaaaattgtccttg 2870  T

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Target: scaffold0743; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 2902 - 3004
Alignment:
Q  241 cttcttcacctctgatgtaaatcttcctctactttgtcgtgtttgctctgttatcatgttattttttgtttaataatctc-aaactctgttgtcctgtta 339  Q
    |||||||| || || |||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||| ||||| |||||||||||||    
T  2902 cttcttcatctatgctgtaaatcttcctctactttgtcgtgtttgctctgttat-------ttttttgtttaacaatctcaaaactttgttgtcctgtta 2994  T
Q  340 cttttttgtt 349  Q
    ||||||||||    
T  2995 cttttttgtt 3004  T

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Target: scaffold0743; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 3014 - 3053
Alignment:
Q  344 tttgttattattgattccaaactccattatgctctctctg 383  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  3014 tttgttattattgatttcaaactccattctgctctctctg 3053  T

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Target: scaffold0252 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 18256 - 18179
Alignment:
Q  130 gagggtatttttgacattttcatcaaaccctaaaaagttcagcttctc--acttccttctttcattcttacgcaaaac 205  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||   |||| ||| ||||||||||||||||||    
T  18256 gagggtatttttgacagtttcatcaaaccctaaaaagttcagtttctcttccttctttcattcattcttacgcaaaac 18179  T

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