View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3969_low_6 (Length: 392)
Name: NF3969_low_6
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3969_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 44829805 - 44830173
Alignment:
| Q |
11 |
cagagacttgacatgggttatatatgtacatggcacagcttgatgcagaatggtataaaacaccttggtaacttgatgaaaaaaggaattcataatttct |
110 |
Q |
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| T |
44829805 |
cagagacttgacatgggttatatatgtacatggcacagcttgatgcagaatggtataaaacaccttggtaacttgatgaaaaaaggaattcataatttct |
44829904 |
T |
|
| Q |
111 |
tggctgattttaagaagtgcatgtatgattatgaccaagaggagaagtttgagacagcttggagcaagttggtttcagaatttaatgtcaacgaaaacaa |
210 |
Q |
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| T |
44829905 |
tggctgattttaagaagtgcatgtatgattatgaccaagaggagaagtttgagacagcttggagcaagttggtttcagaatttaatgtcaacgaaaacaa |
44830004 |
T |
|
| Q |
211 |
ttgggtgaagtcgatgtatgctattaagggaaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagt |
310 |
Q |
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| T |
44830005 |
ttgggtgaagtcgatgtatgctattaagggaaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagt |
44830104 |
T |
|
| Q |
311 |
ttgaattctgattttaaggcatatgtatgacaccaaacatcaatgttactgatttttgagagaattgtg |
379 |
Q |
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| T |
44830105 |
ttgaattctgattttaaggcatatgtatgacaccaaacatcaatgttactgatttttgagagagttgtg |
44830173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 114 - 318
Target Start/End: Complemental strand, 6273839 - 6273635
Alignment:
| Q |
114 |
ctgattttaagaagtgcatgtatgattatgaccaagaggagaagtttgagacagcttggagcaagttggtttcagaatttaatgtcaacgaaaacaattg |
213 |
Q |
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| T |
6273839 |
ctgactttaagaagtgcatgtatgaatacgattcagaggtgaagtttgaagcagcttggagcaagttggttgcaaaatttgatctatttggtaacaattg |
6273740 |
T |
|
| Q |
214 |
ggtgaagtcgatgtatgctattaagggaaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagtttg |
313 |
Q |
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| T |
6273739 |
ggtgaaatcaatgtatggtatcaagcaaaaatgggcatcatgtcacatgaacaaagctatcactcttggaatgcgaagcactcaacttagtgagagttta |
6273640 |
T |
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| Q |
314 |
aattc |
318 |
Q |
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||||| |
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| T |
6273639 |
aattc |
6273635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 318
Target Start/End: Original strand, 31640453 - 31640657
Alignment:
| Q |
114 |
ctgattttaagaagtgcatgtatgattatgaccaagaggagaagtttgagacagcttggagcaagttggtttcagaatttaatgtcaacgaaaacaattg |
213 |
Q |
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|||| |||||||||||||||||||| || || ||||| ||||||||| |||||||||||||||||||| || ||||| || | | |||||||| |
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| T |
31640453 |
ctgactttaagaagtgcatgtatgaatacgattcagaggtgaagtttgaagcagcttggagcaagttggttgcaaaatttgatctatttggtaacaattg |
31640552 |
T |
|
| Q |
214 |
ggtgaagtcgatgtatgctattaagggaaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagtttg |
313 |
Q |
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| T |
31640553 |
ggtgaaatcaatgtgtggtatcaagcaaaaatgggcatcatgtcacatgaacaaagttatcactcttggaatgcgaagcactcaacttagtgagagttta |
31640652 |
T |
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| Q |
314 |
aattc |
318 |
Q |
| |
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||||| |
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|
| T |
31640653 |
aattc |
31640657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 5910425 - 5910500
Alignment:
| Q |
241 |
aaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagtttgaat |
316 |
Q |
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| T |
5910425 |
aaaatgggctgcatgttatatgaaggaagcattaacacttggcatgcgaagtacacaagttagtgaaagtttgaat |
5910500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 7282713 - 7282638
Alignment:
| Q |
241 |
aaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagtttgaat |
316 |
Q |
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| T |
7282713 |
aaaatgggctgcatgttatatgaaggaagcattaacacttggcatgcgaagtacacaagttagtgaaagtttgaat |
7282638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 10466111 - 10466036
Alignment:
| Q |
241 |
aaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagtttgaat |
316 |
Q |
| |
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|||||||| |||||| |||||||||||||||| || || || |||||||| || ||| ||||||| ||||||||| |
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| T |
10466111 |
aaaatgggctgcatgttatatgaaggaagcattaacacttggcatgcgaagtacacaagttagtgaaagtttgaat |
10466036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 43735763 - 43735688
Alignment:
| Q |
241 |
aaaatgggaagcatgtcatatgaaggaagcattcactctaggaatgcgaagcactcaacttagtgagagtttgaat |
316 |
Q |
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|||||||| |||||| |||||||||||||||| || || || |||||||| || ||| ||||||| ||||||||| |
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| T |
43735763 |
aaaatgggctgcatgttatatgaaggaagcattaacacttggcatgcgaagtacacaagttagtgaaagtttgaat |
43735688 |
T |
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