View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3969_low_8 (Length: 363)

Name: NF3969_low_8
Description: NF3969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3969_low_8
NF3969_low_8
[»] chr5 (2 HSPs)
chr5 (20-353)||(16593529-16593859)
chr5 (135-228)||(2078538-2078631)
[»] chr2 (4 HSPs)
chr2 (135-241)||(8561055-8561161)
chr2 (130-228)||(1648007-1648105)
chr2 (135-241)||(16290747-16290853)
chr2 (135-227)||(37520595-37520687)
[»] chr8 (3 HSPs)
chr8 (135-225)||(16008440-16008530)
chr8 (185-241)||(3801887-3801943)
chr8 (200-232)||(23491985-23492017)
[»] chr1 (7 HSPs)
chr1 (135-241)||(49350458-49350564)
chr1 (135-228)||(32079309-32079402)
chr1 (135-241)||(49527422-49527528)
chr1 (134-228)||(4001849-4001943)
chr1 (135-241)||(52920983-52921089)
chr1 (130-229)||(51850760-51850859)
chr1 (159-228)||(8670805-8670874)
[»] scaffold0279 (1 HSPs)
scaffold0279 (143-241)||(18395-18493)
[»] chr3 (3 HSPs)
chr3 (135-241)||(51450751-51450857)
chr3 (143-239)||(31566248-31566344)
chr3 (135-241)||(52136319-52136425)
[»] chr6 (3 HSPs)
chr6 (135-226)||(20430569-20430660)
chr6 (198-239)||(2544917-2544958)
chr6 (141-241)||(6079585-6079685)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 16593529 - 16593859
Alignment:
Q  20 gttaaaagtatataagaataatactttttttcacattaaatattttgattaagtaggtaatatattattatagtcnnnnnnnnnnnnaatgatatcatta 119  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||            |||||||||||||    
T  16593529 gttaaaagtatataacaataataatttttt-cacattaaatattttgattaagtacgtaatatattattatagtctatttttttt--aatgatatcatta 16593625  T
Q  120 tagtctttgcgaattctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttcta 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16593626 tagtctttgcgaattctgcctagaccggtctcaagccttggtaaaaggagagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttcta 16593725  T
Q  220 tgacatggatcaattacgaaattgtatttgttgtaacattatagtcttttcgaaacaataatgatattataataattaaatattcgtatgttcctaaata 319  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16593726 taacatggatcaattacgaaattgtatttgttgtaacattatagtcttttcgaaacaataatgatattataataattaaatattcgtatgttcctaaata 16593825  T
Q  320 aatataaactttcgaaacacacactccccctatg 353  Q
    ||||||||||||||||||||||||||||||||||    
T  16593826 aatataaactttcgaaacacacactccccctatg 16593859  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 2078631 - 2078538
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatgga 228  Q
    ||||| ||||||||| ||||||  | |||||||| |||||||||||   |||||||| | || |||||| ||||| |||| |||||||||||||    
T  2078631 ctgccaaggccggtcccaagcccggataaaaggagagggttgtgttaggcctcgacagccaaagtaaaactttgtcgaatctctatgacatgga 2078538  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 8561161 - 8561055
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaatt 234  Q
    ||||| ||||||||| ||||||| |||||||||| |||||||||||   |||||||| | || |||||| ||||||||||  |||||||||||| ||| |    
T  8561161 ctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatccctatgacatggaccaaat 8561062  T
Q  235 acgaaat 241  Q
    |||||||    
T  8561061 acgaaat 8561055  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 1648007 - 1648105
Alignment:
Q  130 gaattctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatgga 228  Q
    |||| ||||| ||||||||| ||||||  |||||||||| |||||||||||   |||||||| | || |||||| ||||| |||| |||||||||||||    
T  1648007 gaatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 1648105  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 16290747 - 16290853
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaatt 234  Q
    ||||| ||||||||| ||||||  |||||||||| |||||||||||   |||||| | | || |||||| ||||| |||| ||||||||||||| ||| |    
T  16290747 ctgccaaggccggtcccaagcccgggtaaaaggaaagggttgtgttaggcctcgatagccaacgtaaaactttgtcgaatctctatgacatggaccaaat 16290846  T
Q  235 acgaaat 241  Q
    |||||||    
T  16290847 acgaaat 16290853  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 37520595 - 37520687
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatgg 227  Q
    ||||| ||||||||| ||||||  |||||||||| |||||||||||   |||||||| | || |||||| ||||| |||| ||||||||||||    
T  37520595 ctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgg 37520687  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 16008530 - 16008440
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacat 225  Q
    ||||| ||||||||| ||||||| |||||||||| |||||||||||   |||||||| | || |||||| |||||||||| ||||||||||    
T  16008530 ctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacat 16008440  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 3801887 - 3801943
Alignment:
Q  185 ctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaattacgaaat 241  Q
    ||||||||| || |||||| |||||||||| ||||||| ||| ||||||||||||||    
T  3801887 ctcgacaaccaacgtaaaactttgttgaatctctatgatatgaatcaattacgaaat 3801943  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 23492017 - 23491985
Alignment:
Q  200 aaaattttgttgaatttctatgacatggatcaa 232  Q
    |||| ||||||||||||||||||||||||||||    
T  23492017 aaaactttgttgaatttctatgacatggatcaa 23491985  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 49350564 - 49350458
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaatt 234  Q
    ||||| ||||||||| ||||||  |||||||||| |||||||||||   |||||||| | || |||||| ||||| |||| ||||||||||||| ||| |    
T  49350564 ctgccaaggccggtcccaagcccaggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggaccaaat 49350465  T
Q  235 acgaaat 241  Q
    |||||||    
T  49350464 acgaaat 49350458  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 32079309 - 32079402
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatgga 228  Q
    ||||| ||||||||||||||||  |||||||||| |||||||||||   |||||||| | || |||||| ||||| |||| |||||||||||||    
T  32079309 ctgccaaggccggtctcaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 32079402  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 49527528 - 49527422
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaatt 234  Q
    ||||| ||||||||| |||||   |||||||||| ||| |||||||   |||||||| | || |||||| |||||||||| ||||||||||||| ||| |    
T  49527528 ctgccaaggccggtcccaagctcgggtaaaaggagaggattgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatggaccaaat 49527429  T
Q  235 acgaaat 241  Q
    |||||||    
T  49527428 acgaaat 49527422  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 4001849 - 4001943
Alignment:
Q  134 tctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatgga 228  Q
    |||||| ||||||| | ||||||  |||||||||| |||||||||||   |||||||| | || |||||| ||||| |||| |||||||||||||    
T  4001849 tctgccaaggccggccccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 4001943  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 52920983 - 52921089
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaatt 234  Q
    ||||| ||||||||| ||||||  |||||||||| |||||||||||   ||| |||| | ||  ||||| ||||| |||| ||||||||||||| ||| |    
T  52920983 ctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgacatggaccaaat 52921082  T
Q  235 acgaaat 241  Q
    |||||||    
T  52921083 acgaaat 52921089  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 51850760 - 51850859
Alignment:
Q  130 gaattctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggat 229  Q
    |||| ||||| ||||| ||| ||||||| |||||||||| |||||||||||   |||||||| | ||  ||||| || || |||| ||||||||||||||    
T  51850760 gaatcctgccaaggccagtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacatccaacataaaacttcgtcgaatctctatgacatggat 51850859  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 8670874 - 8670805
Alignment:
Q  159 ggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatgga 228  Q
    |||||||||| |||||||||||   |||||||| | ||||||||| ||||| |||| ||||| |||||||    
T  8670874 ggtaaaaggagagggttgtgttaggcctcgacagccaatgtaaaactttgtcgaatctctataacatgga 8670805  T

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Target: scaffold0279 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 18395 - 18493
Alignment:
Q  143 gccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaattacgaaat 241  Q
    ||||||| ||||||  |||||||||| | |||||||||   |||||||||| || |||||| ||||| |||| ||||||||||||| ||| ||||||||    
T  18395 gccggtcccaagcccgggtaaaaggagaaggttgtgttaagcctcgacaaccaacgtaaaactttgtcgaatctctatgacatggaccaaatacgaaat 18493  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 51450857 - 51450751
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaatt 234  Q
    ||||| ||||||||| ||||||  |||||||||| |||||||||||   |||||||| | || |||||| ||||| |||| |||||| |||||| ||| |    
T  51450857 ctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatatctatggcatggaccaaat 51450758  T
Q  235 acgaaat 241  Q
    |||||||    
T  51450757 acgaaat 51450751  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 31566344 - 31566248
Alignment:
Q  143 gccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaattacgaa 239  Q
    ||||||| ||||||  |||||||||| |||||||||||   |||||||| | || ||| || ||||| |||| ||||||||||||| ||| ||||||    
T  31566344 gccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtagaactttgtagaatctctatgacatggaccaaatacgaa 31566248  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 52136319 - 52136425
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaatt 234  Q
    ||||| ||||||||| ||||||  |||||||||| |||||||||||   ||| || | | || |||||| ||||| |||| |||||||||| || ||| |    
T  52136319 ctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgatagccaacgtaaaactttgtcgaatctctatgacatagaccaaat 52136418  T
Q  235 acgaaat 241  Q
    |||||||    
T  52136419 acgaaat 52136425  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 20430660 - 20430569
Alignment:
Q  135 ctgcctaggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatg 226  Q
    ||||| ||||||||| |||||   |||||||||| |||||||||||   |||||||| | || |||||| |||||||||| |||||||||||    
T  20430660 ctgccaaggccggtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatg 20430569  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 2544958 - 2544917
Alignment:
Q  198 gtaaaattttgttgaatttctatgacatggatcaattacgaa 239  Q
    |||||| ||||| |||||||||||||||||||||| ||||||    
T  2544958 gtaaaactttgtggaatttctatgacatggatcaagtacgaa 2544917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 6079585 - 6079685
Alignment:
Q  141 aggccggtctcaagccttggtaaaaggatagggttgtgttgcacctcgacaacaaatgtaaaattttgttgaatttctatgacatggatcaattacgaaa 240  Q
    ||||||||| ||||||  |||||||||| ||||||| |||   ||||||||   || |||||| ||||| |||| ||||||||||||| ||  |||||||    
T  6079585 aggccggtcccaagcccgggtaaaaggagagggttgcgttaggcctcgacagtcaacgtaaaactttgtcgaatctctatgacatggaccacatacgaaa 6079684  T
Q  241 t 241  Q
    |    
T  6079685 t 6079685  T

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