View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_high_13 (Length: 270)
Name: NF3970_high_13
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 2866295 - 2866054
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcaaagtaactcttaccttaatggacaaagtctttcctttgttgtc |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2866295 |
caaaggttcaagatctagatggcaagccatgtcaaggaattgggggcaaaattggcaaagtaactcttaccttaatggacaaagtctttcctttgttgtc |
2866196 |
T |
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| Q |
111 |
accacaagtaatggtcacagtgtggtttcattcaatgctgctcctgctggttggtcttttggtcagacctacactggaaggcagttcaactattaagcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2866195 |
accacaagtaatggtcacagtgtggtttcattcaatgctgctcctgctggttggtcctttggtcagacctacactggaaggcagttcaactattaagcaa |
2866096 |
T |
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| Q |
211 |
cattttaatcaatgtttttaaaaccgaatcgaacggtttaac |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2866095 |
cattttaatcaatgtttttaaaaccgaatcgaacggtttaac |
2866054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 3803529 - 3803343
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcaaagtaactcttaccttaatggacaaagtctttcctttgttgtc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||| ||||| ||| |
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| T |
3803529 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtc |
3803430 |
T |
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| Q |
111 |
accacaagtaatggtcacagtgtggtttcattcaatgctgctcctgctggttggtcttttggtcagacctacactggaaggcagttc |
197 |
Q |
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| T |
3803429 |
accactggtaatggtcatagtattgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttc |
3803343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 3814197 - 3814012
Alignment:
| Q |
12 |
aaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcaaagtaactcttaccttaatggacaaagtctttcctttgttgtca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||| ||||| |||| |
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| T |
3814197 |
aaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttgaatggacaaagtctttcatttgtagtca |
3814098 |
T |
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| Q |
112 |
ccacaagtaatggtcacagtgtggtttcattcaatgctgctcctgctggttggtcttttggtcagacctacactggaaggcagttc |
197 |
Q |
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| T |
3814097 |
ccactggtaatggtcatagtattgtgtcatttaatgttgccccacccagttggtcctttggacaaacctacactggaaggcagttc |
3814012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 27488146 - 27488065
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcaaagtaactcttaccttaatggacaa |
92 |
Q |
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|||||| ||||| ||| |||||||| | |||||||| |||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
27488146 |
caaagggtcaagaactggatggcaaccaatgtcaagaaattggggtcaaaattggcaaagcaactcttatcttaatggacaa |
27488065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 27476888 - 27476807
Alignment:
| Q |
11 |
caaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcaaagtaactcttaccttaatggacaa |
92 |
Q |
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|||||| ||||| ||| | |||||| | |||||||| |||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
27476888 |
caaagggtcaagaactggttggcaaccaatgtcaagaaattggggccaaaattggcaaagcaactcttatcttaatggacaa |
27476807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 11592875 - 11592966
Alignment:
| Q |
12 |
aaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcaaagtaactcttaccttaatggacaaagtctttcctt |
103 |
Q |
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|||||||||| |||| |||||| | ||||| || |||||||| |||||||||||||| |||||| ||||| ||||||||||||| ||||| |
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| T |
11592875 |
aaaggttcaaaaactaattggcaaccaatgtctagaaattggggccaaaattggcaaagcaactctaaccttgatggacaaagtctctcctt |
11592966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 31999546 - 31999476
Alignment:
| Q |
24 |
actagatggcaagccatgtcaaggaattggggacaaaattggcaaagtaactcttaccttaatggacaaag |
94 |
Q |
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||||| |||||| |||||||||| |||||||| ||||| ||||| || || || ||||||||||||||||| |
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| T |
31999546 |
actagctggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctaccttaatggacaaag |
31999476 |
T |
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