View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_high_6 (Length: 377)
Name: NF3970_high_6
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 41226017 - 41225839
Alignment:
| Q |
19 |
acttttacatcgttttgctgcattatcaggttatactcctgtttttgctttaatttatatgatggtaattaagagaattgcaaatggaaatgattaattg |
118 |
Q |
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| T |
41226017 |
acttttacatcgttttgctgcattatcaggttatactcctgtttttgctttaatttatatgatggtaattaagagaattgcaaatggaaatcattaattg |
41225918 |
T |
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| Q |
119 |
catttttcttacttgtaatgtaaatggaaatgtgttctgaaatagggttgaatgtaagagaattaaagtaattaagcaa |
197 |
Q |
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| T |
41225917 |
catttttcttacttgtaatgtaaattgaaatgtgttctgaaatagggttgaatgtaagagaattaaagtaattaagcaa |
41225839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 239 - 368
Target Start/End: Complemental strand, 41225797 - 41225668
Alignment:
| Q |
239 |
caatggtggaacactagtggtaaataatggcaatagcaaagtaccctgtgtcagtgcttgtttggattttgttttttatggtgagtgatctttggaagta |
338 |
Q |
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| T |
41225797 |
caatggtggaacactagtggtaaataatggcaatagcagagtaccctgtgtcagtgcttgtttggattttgttttttatggtgagtgatctttggaagta |
41225698 |
T |
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| Q |
339 |
ttggtgtatccttttttgctctagaattat |
368 |
Q |
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| T |
41225697 |
ttggtgtatccttttttgctctagaattat |
41225668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 29628965 - 29628917
Alignment:
| Q |
320 |
tgagtgatctttggaagtattggtgtatccttttttgctctagaattat |
368 |
Q |
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| T |
29628965 |
tgagtgatctttggaagtattgatgtatcctgttttgctttagaattat |
29628917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 1597063 - 1597109
Alignment:
| Q |
63 |
ttgctttaatttatatgatggtaattaagagaattgcaaatggaaat |
109 |
Q |
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| T |
1597063 |
ttgctttaatctatatgatggtaattaagagaattgcaaatggaaat |
1597109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 555042 - 555092
Alignment:
| Q |
60 |
tttttgctttaatttatatgatggtaattaagagaattgcaaatggaaatg |
110 |
Q |
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| T |
555042 |
tttttgctttaatttatatgaagttaattatgagaactgcaaatggaaatg |
555092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 1597220 - 1597270
Alignment:
| Q |
308 |
tgttttttatggtgagtgatctttggaagtattggtgtatccttttttgct |
358 |
Q |
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| T |
1597220 |
tgttttttatgctgattgatctttggaagtatcggtgtatcctgttttgct |
1597270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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