View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_high_9 (Length: 313)
Name: NF3970_high_9
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 33710762 - 33711046
Alignment:
| Q |
14 |
gaagagtacaacaagaacttaaataaataaactcttgaataaaaatgaatcacaaattgttccgtgagcttaagtcagtttatatgaacattgtatttta |
113 |
Q |
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| T |
33710762 |
gaagagtacaacaagaacttaaataaataaactcttgaataaaaatgaaccacaaattatcccgtgaatttaagtcggtttatatggacattatatttta |
33710861 |
T |
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| Q |
114 |
tatacaacggacaagttattgattcactttaagacaatgaaattctagttaccgaacaacttaac-nnnnnnnngtgaactacaaacaatagctaaaatg |
212 |
Q |
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| T |
33710862 |
tatacaacggataagttattgattcactttaagacaatataattctagttaccgaacaacttaacaaaaaaaaagtgaactacaaacaatagataaaatg |
33710961 |
T |
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| Q |
213 |
tagaacgttatatacatattcctcacaaatgccatttacaacatatccaaagaaggtgaaattgttgccatctgttcattaccat |
297 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |
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| T |
33710962 |
tagaacgttatacacatattcctcacaaatgccatttacaacatatccacagaagaagacattgttgtcatctgttcattaccat |
33711046 |
T |
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