View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_low_1 (Length: 810)
Name: NF3970_low_1
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 105 - 457
Target Start/End: Original strand, 26162035 - 26162389
Alignment:
| Q |
105 |
ccttagagtgaaagcaaattgcaatggatggaggaaacgacacaacgacgtagacggagaagacaagacgttgaatatatagtctccaatcaacggagaa |
204 |
Q |
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| T |
26162035 |
ccttagagtgaaagcaaattgcaatggatggaggaaacgacacaaccacgtagacgaagaagacaagacgttgaatatatagtctccaatcaacggagaa |
26162134 |
T |
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| Q |
205 |
tcgcatgaacaagatacaatggtagagaaaacactgcaaaggaaaaacaaagcaccgataatgagataaaagtgacacaatccgcggccaccggtaaccc |
304 |
Q |
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| T |
26162135 |
tcgcatgaacaagagacaatggtagagaaaacactgcaaaggaaaaacaaagcaccgataatgagataaaagtgacacaatccgcggccgcgggtaaccc |
26162234 |
T |
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| Q |
305 |
tagtaagggaaaccctagcatagtggcaaggaatgagttctccgacagggaattattaacgcttcttgggccatcacatcatgtttaattatctccaata |
404 |
Q |
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| T |
26162235 |
tagtatgggaaaccctagcatagtggcaaggaatgagttctccgacagggaattattaacgcttcttgggccatcatatcatgtttaattatctccaata |
26162334 |
T |
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| Q |
405 |
catttgaggttttattcttt--aaaaagtcttaatattaaattaacttgctatat |
457 |
Q |
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| T |
26162335 |
tatttgaggttttattctttaaaaaaagtcttaatattaaattaacttgctatat |
26162389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 672 - 795
Target Start/End: Original strand, 26162578 - 26162700
Alignment:
| Q |
672 |
gctgtaagatgcatagcataaagagatatacttgagattgcattattcaaattggtgggatagtcttttacgttgtttacattgtatttaatattgtaat |
771 |
Q |
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| T |
26162578 |
gctgtaagatacatagcataaagagatatacttgagattgcattatt-aaattggtgggatagtcttttacgttgtttacattgtatttaatattgtaat |
26162676 |
T |
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| Q |
772 |
cacattatatttgggttaaggtat |
795 |
Q |
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| T |
26162677 |
cacattatatttgggttaaggtat |
26162700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 473 - 596
Target Start/End: Original strand, 26162376 - 26162502
Alignment:
| Q |
473 |
ttaacttgctatattaggcaaaagcgagtggctcagagttggacct---cttttctaaatatatattatgagtgactattaatctatatgcactaacatc |
569 |
Q |
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| T |
26162376 |
ttaacttgctatattaggaaaaagcgagtggctcagagttggacctgatcttttcgaaatatatattatgagtgactattaatctatatgcactaacatc |
26162475 |
T |
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| Q |
570 |
ttaaagaaattcattaaacgttcaatc |
596 |
Q |
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| T |
26162476 |
ttaaagaaattcattaaacgttcaatc |
26162502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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