View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_low_10 (Length: 291)
Name: NF3970_low_10
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 52162844 - 52162555
Alignment:
| Q |
1 |
ttataattataaatattagtattgtatatgaggcccattaaacaaacccattaaaactagatttatctctatttaaacaagttaaatttcaacattgtaa |
100 |
Q |
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| T |
52162844 |
ttataattataaatattagtattgtatatgaggcccattaaacaaacccattaaaactagatttatctctatttaaacaagttaaatttcaacattgtaa |
52162745 |
T |
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| Q |
101 |
tttacaaccttgatataatattnnnnnnnnncatttcacaattctacacacatgttgtaacttcttcaatcaaaaacatcatggcttggtggcaccgcta |
200 |
Q |
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| T |
52162744 |
tttacaaccttgatataatattaaaaaaaaacatttcacaattctacacacatgttgtaacttcttcaatcaaaa-catcatggcttggtggcaccgcta |
52162646 |
T |
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| Q |
201 |
caaatctgcaagcttcgtattcacattattcatcattatttccatgataatatggttagcttgctttggggttcgtaggaaagaacataat |
291 |
Q |
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| T |
52162645 |
caaatctgcaagcttcgtattcacattattcatcattattttcatgataatatggttagcttgctttggggttcgtaggaaagaacataat |
52162555 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 27470657 - 27470722
Alignment:
| Q |
58 |
tagatttatctctatttaaacaagttaaatttcaa-cattgtaatttacaaccttgatataatatt |
122 |
Q |
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||||||| ||||||||||| |||||||||||| || |||| ||||||||||| || | |||||||| |
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| T |
27470657 |
tagatttgtctctatttaagcaagttaaatttaaagcattataatttacaactttaaaataatatt |
27470722 |
T |
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