View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3970_low_11 (Length: 283)
Name: NF3970_low_11
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 121 - 273
Target Start/End: Complemental strand, 8337607 - 8337455
Alignment:
| Q |
121 |
ttttagtctttaattgattttgtcccgaatacttctcataccttaaaaatatttttaagttacagtacccgacatcaattattttaatatccatataatt |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8337607 |
ttttagtctttaattgactttgtcccgaatacttctcataccttaaaaatatttttaagttacagtacccgacatcaattattttaatatccatataatt |
8337508 |
T |
|
| Q |
221 |
tttgtatattcagttatttttaactaaattaaatttgcattaattgtcctatg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8337507 |
tttgtatattcagttatttttaactaaattaaatttgcatcaattgtcttatg |
8337455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 8337767 - 8337653
Alignment:
| Q |
18 |
ggatcttatctttgttgcgttctagaaagtgaatttaggataagcat-----------acatacaatcccatttaaagttgttatataacattgatataa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8337767 |
ggatcttatctttgttgcgttctagaaagtgaatttaggataagcatgttgaaagcatacatacaatcccatttaaagttgttatataacattgatataa |
8337668 |
T |
|
| Q |
107 |
aggattggttcttct |
121 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8337667 |
aggattggttcttct |
8337653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University