View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_low_12 (Length: 279)
Name: NF3970_low_12
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 30006266 - 30006003
Alignment:
| Q |
1 |
atatagaatgattttcaatagcatgaacgattaagcaagaggatgaaagaataaacaaatccagatggagagttttatgatagcttactgttcctgcagt |
100 |
Q |
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| T |
30006266 |
atatagaatgattttcaatagcatgaacgattaagcaagaggatgaaagaataaacaaatccagatggagagttttatgatagcttactgttcctgcagt |
30006167 |
T |
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| Q |
101 |
tgatcttgaagaaagaaatgtactgtgcttcatacgcgataagccaaaatcacatacctattcaacagacnnnnnnnnnngccattgtcgtgtcaataca |
200 |
Q |
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| T |
30006166 |
tgatcttgaagaaagaaatgtactgtgcttcatacgcgataagccaaaatcacatacctattcaacagac-aaaaaaaaagccattgtcgtgtcaataca |
30006068 |
T |
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| Q |
201 |
tagcatttctcatactaaggaactctaattatgagattacattacctttacaacccaatatttat |
265 |
Q |
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| T |
30006067 |
tagcatttctcatactaaggaactctaattatgagattacattacctttacaacccaatttttat |
30006003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 45204559 - 45204467
Alignment:
| Q |
75 |
ttatgatagcttactgttcctgcagttgatcttgaagaaagaaatgtactgtgcttcatacgcgataagccaaaatcacatacctattcaaca |
167 |
Q |
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| T |
45204559 |
ttatgatagcttactgttcctgcagttgatctagaagaaaggaacgtactgtacttcattcgagataagccaaaatcgcatacctattcaaca |
45204467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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