View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3970_low_2 (Length: 799)

Name: NF3970_low_2
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3970_low_2
NF3970_low_2
[»] chr8 (20 HSPs)
chr8 (445-780)||(32634010-32634345)
chr8 (38-442)||(32634989-32635393)
chr8 (534-780)||(6309582-6309828)
chr8 (525-777)||(13165627-13165879)
chr8 (491-780)||(14405460-14405749)
chr8 (526-776)||(5607143-5607393)
chr8 (526-776)||(5627977-5628227)
chr8 (526-776)||(5550536-5550786)
chr8 (325-443)||(5647212-5647330)
chr8 (100-429)||(5605362-5605688)
chr8 (100-429)||(5629682-5630008)
chr8 (325-432)||(6308580-6308687)
chr8 (381-435)||(14406404-14406458)
chr8 (377-441)||(13166872-13166936)
chr8 (198-284)||(14406555-14406641)
chr8 (391-435)||(5553137-5553181)
chr8 (533-659)||(12187731-12187857)
chr8 (533-659)||(12432159-12432285)
chr8 (199-292)||(13167021-13167114)
chr8 (196-233)||(6308451-6308488)
[»] scaffold0363 (3 HSPs)
scaffold0363 (491-780)||(13104-13393)
scaffold0363 (381-435)||(12395-12449)
scaffold0363 (198-284)||(12212-12298)
[»] chr3 (1 HSPs)
chr3 (544-586)||(36002733-36002775)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 445 - 780
Target Start/End: Complemental strand, 32634345 - 32634010
Alignment:
Q  445 tatgaatgttagtacttagtatttctgtagtaagccgcacaatctgtatagaaaacatgtgtttagggaggaaagtcagggtatcattttcttactctat 544  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  32634345 tatgaatgttagtacttagtattgctgtagtaagccgcataatctgtatagaaaacatgtgtataggaaggaaagtcagggtattattttcttactctat 32634246  T
Q  545 tatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatgaacgaattgtttgcccatttc 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||| |||||||||||||||    
T  32634245 tatttttcaatacatcataaacttccttaggatcccacaatctactgctttgttctggattcttaagagattcttcacgaacgacttgtttgcccatttc 32634146  T
Q  645 ttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactcttataagagccttgtctaaaagagttcttatccctatatctgcaaagaaaccgcac 744  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32634145 ttgtatcaagtcatgcatttgtatgcaattttcaaagtcaactcttataagagccttgtctaaaagagttcttatccctatatctgcaaagaaaccgcac 32634046  T
Q  745 tgatttaatattgttgtcatcctatccctttcatgt 780  Q
    ||||||||||||||||||||||||||||||||||||    
T  32634045 tgatttaatattgttgtcatcctatccctttcatgt 32634010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 38 - 442
Target Start/End: Complemental strand, 32635393 - 32634989
Alignment:
Q  38 aaggaaatattgtctgggatttcagacaagaaaggaacatttgtaccaaataatatcaagtgttttacattcacgaaagcaggagtaggaagtactttat 137  Q
    |||||||| |||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||| ||| |||||||||| ||||||||| |||||    
T  32635393 aaggaaatgttgtctgggatttcagacaagaaaggaacatcattaccaaataatattaagtgttttacactcaggaaagcaggactaggaagtattttat 32635294  T
Q  138 gtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggcaaagttttcaggaagatccacaagactatcactgacggg 237  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32635293 gtaagatgatggaagagtcacgttcacctttcagtgaattcgcaagccagatacaattggcaaagttttcaggaagatccacaagactatcactgatagg 32635194  T
Q  238 agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcacccaactcaggcaaactcnnnnnnnnnttatcaactgaagaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||         |||||||||||||||    
T  32635193 agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttatttgcaccgaactcaggcaaactcaaaaacaaattatcaactgaagaa 32635094  T
Q  338 aatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgc 437  Q
    |||| |||  |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||    
T  32635093 aatgtgacggagaactcttggagattgatgcaattcatggcattcaattcacggagggctggtgaacaagtgttactggaaatgctcttaagcgatatgc 32634994  T
Q  438 atcca 442  Q
    |||||    
T  32634993 atcca 32634989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 534 - 780
Target Start/End: Original strand, 6309582 - 6309828
Alignment:
Q  534 tcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatgaacgaattgt 633  Q
    |||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||| | ||||    
T  6309582 tcttactctattatttttcaatacattacaaacttccttaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaacaatttgt 6309681  T
Q  634 ttgcccatttcttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactcttataagagccttgtctaaaagagttcttatccctatatctgcaa 733  Q
    || ||  ||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||    
T  6309682 tttcctgtttcttgtatcaagtcatgcatttgtatgcaattttcaaagtcaacgcttataagagccttgtctaaaagattacttatccctatatcagcaa 6309781  T
Q  734 agaaaccgcactgatttaatattgttgtcatcctatccctttcatgt 780  Q
    ||||||| |||| |||||||||| |||| || |||| ||||||||||    
T  6309782 agaaaccacactcatttaatatttttgttattctattcctttcatgt 6309828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 525 - 777
Target Start/End: Complemental strand, 13165879 - 13165627
Alignment:
Q  525 gtatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatga 624  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| ||    
T  13165879 gtatcattctcttactctattatttttcaatacatcaaaaacttccttaggatcacataatctactgcgttgtccaggattcttaagagattcttcacga 13165780  T
Q  625 acgaattgtttgcccatttcttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactcttataagagccttgtctaaaagagttcttatcccta 724  Q
    || | |||| | |||||||| |||||||||||||| ||||||| | || ||| | ||||||||||||||||||||||||||||||||   ||||||||||    
T  13165779 acaatttgtcttcccatttcctgtatcaagtcatgcatttgtatgaaatttttatagtcaactcttataagagccttgtctaaaagatgacttatcccta 13165680  T
Q  725 tatctgcaaagaaaccgcactgatttaatattgttgtcatcctatccctttca 777  Q
    |||| ||||||||||| || | |||||||||| ||||||  |||| |||||||    
T  13165679 tatcagcaaagaaaccacagtcatttaatatttttgtcacgctattcctttca 13165627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 491 - 780
Target Start/End: Complemental strand, 14405749 - 14405460
Alignment:
Q  491 tatagaaaacatgtgtttagggaggaaagtcagggtatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctact 590  Q
    |||| ||||||| ||| |||| ||| |||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  14405749 tataaaaaacatatgtgtaggaagggaagtgagggtttcattctcttactctattatttttcaatacatcgtaaacttccttaggatcacataatctact 14405650  T
Q  591 gcgttgtccgggattcttaagagattcttcatgaacgaattgtttgcccatttcttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactctt 690  Q
    ||||||||||||||||||| | ||||||||| |||| | |||||| |||||||||||||||||||| || ||||||| |||| ||| | ||||||| ||     
T  14405649 gcgttgtccgggattcttatgtgattcttcacgaacaatttgttttcccatttcttgtatcaagtcgtgcatttgtatgcaatttttagagtcaaccctc 14405550  T
Q  691 ataagagccttgtctaaaagagttcttatccctatatctgcaaagaaaccgcactgatttaatattgttgtcatcctatccctttcatgt 780  Q
    | |||||||||||||||||||   |||||||| ||||| ||||||||||| |||| |||||||||| |||| || ||||  |||||||||    
T  14405549 acaagagccttgtctaaaagatgacttatcccaatatcagcaaagaaaccacactcatttaatatttttgttatgctatttctttcatgt 14405460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 526 - 776
Target Start/End: Original strand, 5607143 - 5607393
Alignment:
Q  526 tatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatgaa 625  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||| |||    
T  5607143 tatcattctcttactctattatttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaa 5607242  T
Q  626 cgaattgtttgcccatttcttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactcttataagagccttgtctaaaagagttcttatccctat 725  Q
    | | |||||| |||||||| ||||||||| |||| ||||||| |||| ||||| ||||||| |||| |||||||||||||||||||   |||||||||||    
T  5607243 caatttgttttcccatttcctgtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctat 5607342  T
Q  726 atctgcaaagaaaccgcactgatttaatattgttgtcatcctatccctttc 776  Q
    ||| || ||||| || |||| ||| |||||| |||| || |||| ||||||    
T  5607343 atcagcgaagaatccacactcattcaatatttttgttatgctattcctttc 5607393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 526 - 776
Target Start/End: Complemental strand, 5628227 - 5627977
Alignment:
Q  526 tatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatgaa 625  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||| |||    
T  5628227 tatcattctcttactctattatttttcaatacatcataaacttcctcaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaa 5628128  T
Q  626 cgaattgtttgcccatttcttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactcttataagagccttgtctaaaagagttcttatccctat 725  Q
    | | |||||| |||||||| ||||||||| |||| ||||||| |||| ||||| ||||||| |||| |||||||||||||||||||   |||||||||||    
T  5628127 caatttgttttcccatttcctgtatcaagccatgcatttgtatgcaattttcagagtcaacccttacaagagccttgtctaaaagatgacttatccctat 5628028  T
Q  726 atctgcaaagaaaccgcactgatttaatattgttgtcatcctatccctttc 776  Q
    ||| || ||||| || |||| ||| |||||| |||| || |||| ||||||    
T  5628027 atcagcgaagaatccacactcattcaatatttttgttatgctattcctttc 5627977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 526 - 776
Target Start/End: Complemental strand, 5550786 - 5550536
Alignment:
Q  526 tatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatgaa 625  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||| |||    
T  5550786 tatcattttcttactctattatttttcaatacgtcataaacttcctcaggatcacataatctactgcgttgtccgggattcttaagtgattcttcacgaa 5550687  T
Q  626 cgaattgtttgcccatttcttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactcttataagagccttgtctaaaagagttcttatccctat 725  Q
    | | |||||| |||||||| ||||||||| |||| ||||||| |||| ||||| |||| ||  ||| |||||||||||||||||||   |||||||||||    
T  5550686 caatttgttttcccatttcctgtatcaagccatgcatttgtatgcaattttcagagtctaccgttacaagagccttgtctaaaagacgacttatccctat 5550587  T
Q  726 atctgcaaagaaaccgcactgatttaatattgttgtcatcctatccctttc 776  Q
    ||| || ||||| || |||| ||| |||||| |||| || |||| ||||||    
T  5550586 atcagcgaagaacccacactcattcaatatttttgttatgctattcctttc 5550536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 325 - 443
Target Start/End: Complemental strand, 5647330 - 5647212
Alignment:
Q  325 atcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctc 424  Q
    ||||||||||| ||||| |||| ||||||||| |||||||| ||| | ||| ||||||||| ||  ||||||||||||||||||||||||  ||| ||||    
T  5647330 atcaactgaagcaaatgggactgagaactctttgagattgaagcaattcatagcattcaatacatggagggctggtgaacaagtgttactgaaaaggctc 5647231  T
Q  425 ttaagcgacgtgcatccag 443  Q
    |||||| | || |||||||    
T  5647230 ttaagcaatgtacatccag 5647212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 100 - 429
Target Start/End: Original strand, 5605362 - 5605688
Alignment:
Q  100 ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca 199  Q
    ||||||| | ||||| |||||| ||| ||||||||||| |||||| ||| |||||||| ||||||  ||||||| | | | ||||||||||  ||||  |    
T  5605362 ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa 5605461  T
Q  200 aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcaccca 299  Q
    |||||| |||||||||| ||||||| |||||| |  ||| |   |||   || |||||||| |||||||||||| |||||||||| || |||| || ||     
T  5605462 aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatccc 5605561  T
Q  300 actcaggcaaactcnnnnnnnnnttatcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctgg 399  Q
    |||| |  |||  |           |||||| |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||    
T  5605562 actctgtaaaatacaaactcaa---atcaacggaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctgg 5605658  T
Q  400 tgaacaagtgttactagaaatgctcttaag 429  Q
    ||||||||||||||| |||| |||||||||    
T  5605659 tgaacaagtgttactggaaaggctcttaag 5605688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 100 - 429
Target Start/End: Complemental strand, 5630008 - 5629682
Alignment:
Q  100 ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca 199  Q
    ||||||| | ||||| |||||| ||| ||||||||||| |||||| ||| |||||||| ||||||  ||||||| | | | ||||||||||  ||||  |    
T  5630008 ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa 5629909  T
Q  200 aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcaccca 299  Q
    |||||| |||||||||| ||||||| |||||| |  ||| |   |||   || |||||||| |||||||||||| |||||||||| || |||| || ||     
T  5629908 aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatccc 5629809  T
Q  300 actcaggcaaactcnnnnnnnnnttatcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctgg 399  Q
    |||| |  |||  |           |||||| |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||    
T  5629808 actctgtaaaatacaaactcaa---atcaacggaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctgg 5629712  T
Q  400 tgaacaagtgttactagaaatgctcttaag 429  Q
    ||||||||||||||| |||| |||||||||    
T  5629711 tgaacaagtgttactggaaaggctcttaag 5629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 325 - 432
Target Start/End: Original strand, 6308580 - 6308687
Alignment:
Q  325 atcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctc 424  Q
    |||||| || ||||||| |||| ||||||||| |||||||||||| ||| | || | |||||  | ||| |||||||||||||||||||| |||| ||||    
T  6308580 atcaacggatgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctc 6308679  T
Q  425 ttaagcga 432  Q
    ||||||||    
T  6308680 ttaagcga 6308687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 14406458 - 14406404
Alignment:
Q  381 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 435  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  14406458 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 14406404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 13166936 - 13166872
Alignment:
Q  377 gcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgcatcc 441  Q
    ||||||||||||| || |||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  13166936 gcattcaattcacggaaggctggagaacaagtgttactggaaaggctcttaagcgacgtacatcc 13166872  T

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Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 14406641 - 14406555
Alignment:
Q  198 caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa 284  Q
    |||||||||||| ||||| |||||||| ||||||||  ||| | ||||| | | |||||||||||| |||||||| |||||||||||    
T  14406641 caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa 14406555  T

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Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 5553181 - 5553137
Alignment:
Q  391 gagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 435  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  5553181 gagggctggtgaacaagtgttactggaaaggctcttaagcgacgt 5553137  T

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Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 659
Target Start/End: Original strand, 12187731 - 12187857
Alignment:
Q  533 ttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatgaacgaattg 632  Q
    |||||||  |||| ||| |||| |||||| ||| |||  ||| || ||||||||||||||||||||| || || || | |||||||||| |||| | |||    
T  12187731 ttcttacattattgtttgtcaacacatcacaaatttcactagcattccacaatctactgcgttgtccagggtttttgatagattcttcacgaacaatttg 12187830  T
Q  633 tttgcccatttcttgtatcaagtcatg 659  Q
      | ||||||||||||| |||||||||    
T  12187831 cctacccatttcttgtaacaagtcatg 12187857  T

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Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 659
Target Start/End: Original strand, 12432159 - 12432285
Alignment:
Q  533 ttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgttgtccgggattcttaagagattcttcatgaacgaattg 632  Q
    |||||||  |||| ||| |||| |||||| ||| |||  ||| || ||||||||||||||||||||| || || || | |||||||||| |||| | |||    
T  12432159 ttcttacattattgtttgtcaacacatcacaaatttcactagcattccacaatctactgcgttgtccagggtttttgatagattcttcacgaacaatttg 12432258  T
Q  633 tttgcccatttcttgtatcaagtcatg 659  Q
      | ||||||||||||| |||||||||    
T  12432259 cctacccatttcttgtaacaagtcatg 12432285  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 13167114 - 13167021
Alignment:
Q  199 aaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattc 292  Q
    |||||||||||||||||||||||||| ||||||||  ||| | |  ||   |  |||||||||| ||||||||||||||||||||| || ||||    
T  13167114 aaagttttcaggaagatccacaagacaatcactgataggaaagactaaccttgtaagattttttttatgcaatattgatgatggaagttcattc 13167021  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 6308451 - 6308488
Alignment:
Q  196 ggcaaagttttcaggaagatccacaagactatcactga 233  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  6308451 ggcaaagttttctggaagatccacaagacaatcactga 6308488  T

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Target: scaffold0363 (Bit Score: 138; Significance: 1e-71; HSPs: 3)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 491 - 780
Target Start/End: Original strand, 13104 - 13393
Alignment:
Q  491 tatagaaaacatgtgtttagggaggaaagtcagggtatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctact 590  Q
    |||| ||||||| ||| |||| ||| |||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  13104 tataaaaaacatatgtgtaggaagggaagtgagggtttcattctcttactctattatttttcaatacatcgtaaacttccttaggatcacataatctact 13203  T
Q  591 gcgttgtccgggattcttaagagattcttcatgaacgaattgtttgcccatttcttgtatcaagtcatgtatttgtacgcaactttcaaagtcaactctt 690  Q
    ||||||||||||||||||| | ||||||||| |||| | |||||| |||||||||||||||||||| || ||||||| |||| ||| | ||||||| ||     
T  13204 gcgttgtccgggattcttatgtgattcttcacgaacaatttgttttcccatttcttgtatcaagtcgtgcatttgtatgcaatttttagagtcaaccctc 13303  T
Q  691 ataagagccttgtctaaaagagttcttatccctatatctgcaaagaaaccgcactgatttaatattgttgtcatcctatccctttcatgt 780  Q
    | |||||||||||||||||||   |||||||| ||||| ||||||||||| |||| |||||||||| |||| || ||||  |||||||||    
T  13304 acaagagccttgtctaaaagatgacttatcccaatatcagcaaagaaaccacactcatttaatatttttgttatgctatttctttcatgt 13393  T

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Target: scaffold0363; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 12395 - 12449
Alignment:
Q  381 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 435  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  12395 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 12449  T

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Target: scaffold0363; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 12212 - 12298
Alignment:
Q  198 caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa 284  Q
    |||||||||||| ||||| |||||||| ||||||||  ||| | ||||| | | |||||||||||| |||||||| |||||||||||    
T  12212 caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa 12298  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 36002733 - 36002775
Alignment:
Q  544 ttatttttcaatacatcataaacttccttaggatcccacaatc 586  Q
    |||| |||||||| |||||| ||||||||||||||||||||||    
T  36002733 ttatatttcaataaatcatacacttccttaggatcccacaatc 36002775  T

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