View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3970_low_4 (Length: 514)
Name: NF3970_low_4
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_low_4 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 167 - 416
Target Start/End: Original strand, 2599873 - 2600120
Alignment:
| Q |
167 |
ctttttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatctt-gattgt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||| || ||||||||||||||||||||||||||||| |||||| |
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|
| T |
2599873 |
ctttttgttaaatgtcatgttctaatgatatgaattattgtcgatgca---atgcagagtttagatcaaaacggtcttgatggatcatatctttgattgt |
2599969 |
T |
|
| Q |
266 |
tacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaatcatga |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2599970 |
tacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaatcatga |
2600069 |
T |
|
| Q |
366 |
ctccaaattcaatatttccatcatcttttaccaaattttgtcaagtaatag |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600070 |
ctccaaattcaatatttccatcatcttttaccaaattttgtcaagtaatag |
2600120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 126 - 407
Target Start/End: Original strand, 2591699 - 2591976
Alignment:
| Q |
126 |
tttatgggctattagcatgtttattgaaagttgaaacgcgactttttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatag |
225 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| || || || |
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|
| T |
2591699 |
tttatgggctattaccatgtttattgaaagttgaaacgcaactttttgttaaatgtcatgttctaattatatgaattattgtccatgca---atacagag |
2591795 |
T |
|
| Q |
226 |
tatatatcaaaacggtcttgatggatcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatg |
325 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| | ||| |
|
|
| T |
2591796 |
tttagatcaaaacggtcttgatggatcatatcttgattgttacatgaatgaacaccaaaatattacaactgaagagacacaaaggcatgttgctcatatg |
2591895 |
T |
|
| Q |
326 |
atttcaaatgaatggaaacgtctcaaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaattttgtc |
407 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2591896 |
atttcaaatgaatggaaacgtctgaatcaag-aatcataactccaaataaaatatttccatcatcttttaccaaattttgtc |
2591976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 176 - 405
Target Start/End: Original strand, 2603030 - 2603259
Alignment:
| Q |
176 |
aaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacatgaatg |
275 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||| |||| |||||||| ||| || ||||||||||||||||||| |||||||| ||||| |||||||||| |
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|
| T |
2603030 |
aaatgccatgttctaattatatgatttattatctatgcgtgaatgcagagtgtagatcaaaacggtcttgatgggtcatatctagattgctacatgaatg |
2603129 |
T |
|
| Q |
276 |
aacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaatcatgactccaaattc |
375 |
Q |
| |
|
|||||||||| | | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||| | |
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|
| T |
2603130 |
aacaccaagagatttcagctcaagaggcacaaagacatgttgctaacatgatttcaaatgaatggaaacgtctcaatcaagaaatcataaccccgaatcc |
2603229 |
T |
|
| Q |
376 |
aatatttccatcatcttttaccaaattttg |
405 |
Q |
| |
|
||| ||| | ||||| |||||||||||||| |
|
|
| T |
2603230 |
aattttttcgtcatcatttaccaaattttg |
2603259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 2600109 - 2600174
Alignment:
| Q |
442 |
gtcaagtaatagttttaagagttcatcaaaatggaaatcttctcaatcctctcatcagtattatct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2600109 |
gtcaagtaatagttttaagagttcatcaaaatggaaatcttctcaatcctctcatcagcattatct |
2600174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 2589664 - 2589715
Alignment:
| Q |
72 |
actgctaatgatataatctagggtatttttgttgaaaagcttctcttgtgtt |
123 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | ||||||| |
|
|
| T |
2589664 |
actgctaatgatataatatagggtatttttgttgaaaagcttttgttgtgtt |
2589715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 2597207 - 2597258
Alignment:
| Q |
72 |
actgctaatgatataatctagggtatttttgttgaaaagcttctcttgtgtt |
123 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
2597207 |
actgctaatgatataatcaagagtatttttgttgaaaagcttctgttgtgtt |
2597258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 143 - 400
Target Start/End: Original strand, 30399610 - 30399867
Alignment:
| Q |
143 |
tgtttattgaaagttgaaacgcgactttttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtc |
242 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
30399610 |
tgtttattgaaagttgaaacgcgagtttttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcagagtatatatcaaaatggtc |
30399709 |
T |
|
| Q |
243 |
ttgatggatcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaa |
342 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| || ||||||||| |
|
|
| T |
30399710 |
ttgatggatcatatcttgattattacatgaatgaacaccaagatagtacaactgaataggcacaaagggatgtttctaacatgatttaaattgaatggaa |
30399809 |
T |
|
| Q |
343 |
acgtctcaaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaa |
400 |
Q |
| |
|
|| || ||| ||| ||||||| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
30399810 |
acatcacaatcaataaatcataactccaaatgcaatattctcataatcttttaccaaa |
30399867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 172 - 360
Target Start/End: Complemental strand, 24070130 - 24069942
Alignment:
| Q |
172 |
tgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacatg |
271 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||||| ||||||||| ||| ||||||| ||||||||||| |||||||||||||| | || | |
|
|
| T |
24070130 |
tgttaaatgtaaagttctaatgataagaattattatccatggatgaatgcagagtggtgatcaaaatggtcttgatgggtcatatcttgattgcttcaag |
24070031 |
T |
|
| Q |
272 |
aatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
| |||||||||||||| | | ||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
24070030 |
agtgaacaccaagatatttccggcgaagaggtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaat |
24069942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 172 - 360
Target Start/End: Original strand, 24080606 - 24080794
Alignment:
| Q |
172 |
tgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacatg |
271 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||||| ||||||| | ||| | ||||||| ||||||||||| |||||||||||||| | |||| |
|
|
| T |
24080606 |
tgttaaatgtaaagttctaatgataagaattattatccatggatgaatgtagagtggagatcaaaatggtcttgatgggtcatatcttgattgcttcatg |
24080705 |
T |
|
| Q |
272 |
aatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
| |||||||||||||| | | ||||| | ||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
24080706 |
agtgaacaccaagatatttccggggaagacgtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaat |
24080794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 30399507 - 30399617
Alignment:
| Q |
17 |
aaaaggtcacaatgtttttgattctatttgactgtgcgttggtcatagnnnnnnnactgctaatgatataatctagggtatttttgttgaaaagcttctc |
116 |
Q |
| |
|
||||||| ||| || |||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30399507 |
aaaaggtgacagtgcttttaattctatttgactgtgcattggtcacaatttttttactgctaatgatataatctaggttatttttgttgaaaagcttctc |
30399606 |
T |
|
| Q |
117 |
ttgtgtttatt |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
30399607 |
ttgtgtttatt |
30399617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 220 - 400
Target Start/End: Complemental strand, 21642413 - 21642233
Alignment:
| Q |
220 |
gcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21642413 |
gcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgct |
21642314 |
T |
|
| Q |
320 |
aacatgatttcaaatgaatggaaacgtctcaaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaa |
400 |
Q |
| |
|
|||| ||||||| ||||||||||| || ||| ||| ||||||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
21642313 |
aacaaaatttcaattgaatggaaacatcacaatcaataaatcataactccaaatgcaatattcccatcatcttttaccaaa |
21642233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 171 - 360
Target Start/End: Complemental strand, 28573439 - 28573250
Alignment:
| Q |
171 |
ttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacat |
270 |
Q |
| |
|
|||| |||||| | |||||||||||| ||||||||||||||| ||||||||| ||| | | ||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
28573439 |
ttgtaaaatgtaaagttctaatgataagaattattatccatgaatgaatgcagagtggagagcaaaatggtcttgatgggtcataccttgattgctacat |
28573340 |
T |
|
| Q |
271 |
gaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
|| |||||||||||||| | | |||||| | ||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
28573339 |
gagtgaacaccaagatatttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaat |
28573250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 360
Target Start/End: Complemental strand, 26314526 - 26314397
Alignment:
| Q |
231 |
atcaaaacggtcttgatggatcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttc |
330 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||| | | |||||| | ||||| ||||||||| |||||||||| |
|
|
| T |
26314526 |
atcaaaatggtcttgatggttcatatcttgattgctacatgagtgaacaccaagatatttccggtgaagacgtgcaaagacatgttgctcacatgatttc |
26314427 |
T |
|
| Q |
331 |
aaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
26314426 |
aaatgaatggaaacgtctcaatcaagaaat |
26314397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 171 - 360
Target Start/End: Complemental strand, 28566690 - 28566505
Alignment:
| Q |
171 |
ttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacat |
270 |
Q |
| |
|
||||||||||| | |||||||||||| || |||| |||| ||||||||| ||| | ||||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
28566690 |
ttgttaaatgtaaagttctaatgataagagttat----catggatgaatgcagagtggagatcaaaatggtcttgatgggtcataccttgattgctacat |
28566595 |
T |
|
| Q |
271 |
gaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
|| |||||||||||||| | | | |||||| | ||| | ||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
28566594 |
gagtgaacaccaagatatttccagtgaagacgtgcaacgacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaat |
28566505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 171 - 360
Target Start/End: Complemental strand, 28584665 - 28584480
Alignment:
| Q |
171 |
ttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacat |
270 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||| |||| ||||||||| ||| | ||||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
28584665 |
ttgttaaatgtaaagttctaatgataagaattat----catggatgaatgcagagtggagatcaaaatggtcttgatgggtcataccttgattgctacat |
28584570 |
T |
|
| Q |
271 |
gaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
|| |||||||||||||| | | | |||||| | ||| | ||||||||| ||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
28584569 |
gagtgaacaccaagatatttccagtgaagacgtgcaaggacatgttgctcacatgatttcaaatgaatggaaatttctcaatcaagaaat |
28584480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 231 - 360
Target Start/End: Complemental strand, 20615299 - 20615170
Alignment:
| Q |
231 |
atcaaaacggtcttgatggatcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttc |
330 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||||| ||| |||||||||| | || |||||| | ||||| ||||||||| | ||||||| |
|
|
| T |
20615299 |
atcaaaatggtcttgatggatcatatcttaattgctacatgagtgagcaccaagatatttcatgtgaagatgtgcaaagacatgttgctgagatgatttt |
20615200 |
T |
|
| Q |
331 |
aaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
||||||||||||| |||| || |||||||| |
|
|
| T |
20615199 |
aaatgaatggaaatgtctaaatcaagaaat |
20615170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 489
Target Start/End: Complemental strand, 24916975 - 24916936
Alignment:
| Q |
450 |
atagttttaagagttcatcaaaatggaaatcttctcaatc |
489 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24916975 |
atagttctaagagttcatcaaaatggaaatcttctcaatc |
24916936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 171 - 360
Target Start/End: Original strand, 259 - 448
Alignment:
| Q |
171 |
ttgttaaatgtcatgttctaatgatatgaattattatccatgcatgaatgcatagtatatatcaaaacggtcttgatggatcatatcttgattgttacat |
270 |
Q |
| |
|
|||| |||||| | |||||||||||| ||||||||||| ||| ||||||||| ||| | ||||||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
259 |
ttgtaaaatgtaaagttctaatgataagaattattatcaatgaatgaatgcagagtggagatcaaaatggtcttgacgggtcatatcttgattgctacat |
358 |
T |
|
| Q |
271 |
gaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
360 |
Q |
| |
|
|| |||||| || |||| | | | |||||| | |||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
359 |
gagtgaacatcaggatatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaat |
448 |
T |
|
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