View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_low_5 (Length: 410)
Name: NF3970_low_5
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 52215832 - 52215979
Alignment:
| Q |
169 |
tcattctcttaaaacctactagtgggagtaggggaagccgaatggagctcccaataaggtggaagaaattgtggagagt--gcatt---gtatatggaac |
263 |
Q |
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| T |
52215832 |
tcattctcttaaatcctactagtgggagtaggggaagctgaatggagctcccaataaggtggaagaatttgtggagagtgcgcattgtagtatatggaac |
52215931 |
T |
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| Q |
264 |
atttatggcaagtactggggaattacattctttactgtctatatatac |
311 |
Q |
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| T |
52215932 |
atttatggcaagtactggggaattacatgctttactgtctatatatac |
52215979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 52215705 - 52215757
Alignment:
| Q |
42 |
gcttgtggcgaaagatgcaacatgacttctgagtgtgttgaatgcaatgcaat |
94 |
Q |
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| T |
52215705 |
gcttgtgccgaaagatgcaacatgacttctgagtgtgttgaatgcaatgcaat |
52215757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 52211885 - 52211937
Alignment:
| Q |
189 |
agtgggagtaggggaagccgaatggagctcccaataaggtggaagaaattgtg |
241 |
Q |
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| T |
52211885 |
agtgggagcaggggaagctgaatggagctcccaataaggtagaagaaattgtg |
52211937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 52211996 - 52212053
Alignment:
| Q |
239 |
gtggagagtgcattgtatatggaacatttatggcaagtactggggaattacattcttt |
296 |
Q |
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| T |
52211996 |
gtggagagtgcattttatatggaacagttatgggaagtattggagcattacatgcttt |
52212053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 52215988 - 52216016
Alignment:
| Q |
309 |
tacgattaatatgacggtaagcaatactt |
337 |
Q |
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| T |
52215988 |
tacgattaatatgacggtaagcaatactt |
52216016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 4162419 - 4162471
Alignment:
| Q |
42 |
gcttgtggcgaaagatgcaacatgacttctgagtgtgttgaatgcaatgcaat |
94 |
Q |
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| T |
4162419 |
gcttgtggcgaaagttgcaacatgacttctgagtgtgttgaatgcaatgcaat |
4162471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 4224039 - 4224091
Alignment:
| Q |
42 |
gcttgtggcgaaagatgcaacatgacttctgagtgtgttgaatgcaatgcaat |
94 |
Q |
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| T |
4224039 |
gcttgtggcgaaagttgcaacatgacttctgagtgtgttgaatgcaatgcaat |
4224091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 4192310 - 4192362
Alignment:
| Q |
189 |
agtgggagtaggggaagccgaatggagctcccaataaggtggaagaaattgtg |
241 |
Q |
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| T |
4192310 |
agtgggagcagggtaagctgaatggagctcccaataaggtggaagaaattgtg |
4192362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 47715466 - 47715415
Alignment:
| Q |
189 |
agtgggagtaggggaagccgaatggagctcccaataaggtggaagaaattgt |
240 |
Q |
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|||||||| |||| |||| ||||||||||||||||||||| ||||||||||| |
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| T |
47715466 |
agtgggagcagggaaagctgaatggagctcccaataaggttgaagaaattgt |
47715415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 47858804 - 47858855
Alignment:
| Q |
189 |
agtgggagtaggggaagccgaatggagctcccaataaggtggaagaaattgt |
240 |
Q |
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|||||||| |||| |||| ||||||||||| ||||||||| ||||||||||| |
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| T |
47858804 |
agtgggagcagggaaagctgaatggagctctcaataaggttgaagaaattgt |
47858855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 47715355 - 47715318
Alignment:
| Q |
239 |
gtggagagtgcattgtatatggaacatttatggcaagt |
276 |
Q |
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| T |
47715355 |
gtggagagtgcattgtatatggaacagttatgggaagt |
47715318 |
T |
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