View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3970_low_7 (Length: 375)
Name: NF3970_low_7
Description: NF3970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3970_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 16699817 - 16699465
Alignment:
| Q |
17 |
tccttcattttaccatttattgaaatgatttgcacagattgcagatgcagtggttgtagctaggtacctaggagccactcttgtgcttcctgacatcaag |
116 |
Q |
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| T |
16699817 |
tccttcattttaccatttcttgaaatgatttgcacagattgcagatgcagtggttgtagctaggtacctaggagccactcttgtgcttcctgacatcaag |
16699718 |
T |
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| Q |
117 |
aatagcaaatcaggaaatagcatgtgtgtgctctatatcacatgataagtttttgattgatatcatttcaatttttattaatttgtttagtaaccaagaa |
216 |
Q |
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| T |
16699717 |
aatagcaaatcaggaaatagcatgtgtgtgctctatatcacatgataagtttttgattgatatcatttcaatttttattaatttgtttagtaaccaagaa |
16699618 |
T |
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| Q |
217 |
ttttaatttatgaatatatgatacgactcatacatagtagatatgcttaaatgccacatataccctcca-----nnnnnnnnctatattttacaaaataa |
311 |
Q |
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| T |
16699617 |
ttttaatttatgaatatatgatacgactcatacatagtagatatgcttaaatgccacatataccctccatttttttttctttctatattttacaaaataa |
16699518 |
T |
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| Q |
312 |
aagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttcat |
364 |
Q |
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| T |
16699517 |
aagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttcat |
16699465 |
T |
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