View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3971_high_1 (Length: 402)
Name: NF3971_high_1
Description: NF3971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3971_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 165 - 398
Target Start/End: Complemental strand, 27715074 - 27714828
Alignment:
| Q |
165 |
aggtgtaaatcatggtgtttaagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaaaaactagtaaca |
264 |
Q |
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| T |
27715074 |
aggtgtaaatcatggtgtgtaagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaataactagtaaca |
27714975 |
T |
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| Q |
265 |
ccttatcacgaggaatcttagaactttgaagtagggtt-------------taattgccttcgttatttccattccatcattctcttgcttatttctctt |
351 |
Q |
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| T |
27714974 |
ccttatcacgaggaatcttagaactttgaagtagggcttatattattgacataattgccttcgttatttccattccatcattctcttgcttatttctctt |
27714875 |
T |
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| Q |
352 |
agaatcattcattaccattaggagaactctaataacctttgctactc |
398 |
Q |
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| T |
27714874 |
agaatcattcattaccattaggagaactctaataacctttgttactc |
27714828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 44753938 - 44754061
Alignment:
| Q |
14 |
attttagcttcaagtctcaaatagaatt-ggtgtattggtgtggatttgcttgccgtatgctagctatggtgcgtcctggatgctagatgagcttattgt |
112 |
Q |
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| T |
44753938 |
attttagcttcaaatctcaaatagaatttggtataatggtgtggatttgcttgccatatgctagctatggtgcttcctggatgctggatgagattattgt |
44754037 |
T |
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| Q |
113 |
catcttattagttactgaaggacc |
136 |
Q |
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| T |
44754038 |
catcttattagttactgaaggacc |
44754061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 44754122 - 44754190
Alignment:
| Q |
184 |
taagtagagctcttcctttttgtatcttaaggatatttggtgtatttttgtacatcttgttttagcaaa |
252 |
Q |
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| T |
44754122 |
taagtagagctctttctttttgtatctgaaggatatttggtgtagttttgtacatctagttttagcaaa |
44754190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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