View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3971_high_2 (Length: 258)

Name: NF3971_high_2
Description: NF3971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3971_high_2
NF3971_high_2
[»] chr5 (7 HSPs)
chr5 (67-240)||(39732636-39732809)
chr5 (1-71)||(39732840-39732910)
chr5 (4-56)||(39901566-39901618)
chr5 (111-198)||(39868226-39868313)
chr5 (111-198)||(39901700-39901787)
chr5 (1-56)||(39868067-39868122)
chr5 (111-152)||(39913661-39913702)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 39732809 - 39732636
Alignment:
Q  67 gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  39732809 gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcgttcc 39732710  T
Q  167 tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732709 tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatg 39732636  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39732910 - 39732840
Alignment:
Q  1 tacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa 71  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  39732910 tacacacaggaactaatgtaacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa 39732840  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 39901566 - 39901618
Alignment:
Q  4 acacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga 56  Q
    |||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  39901566 acacaggaactaaaataacaactacaacaaaatcacttcctacaatagataga 39901618  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 39868226 - 39868313
Alignment:
Q  111 ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat 198  Q
    ||||||||| || |||||||| ||||||||||||||| ||||||||||   |||| || |||||||||   |||||||||||||||||    
T  39868226 ataccatttgtaacccccaacttcaaatacatctgaatagagctttattgtatttatcgaagaaaatcccccaattctccatgtgaat 39868313  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 39901700 - 39901787
Alignment:
Q  111 ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat 198  Q
    ||||||||||||||| ||||| ||||||||||||||| ||| || | || ||||| ||  ||||||||| |||||| ||||| |||||    
T  39901700 ataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttctgagaaaatctgtcaattgtccatttgaat 39901787  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39868067 - 39868122
Alignment:
Q  1 tacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga 56  Q
    |||||| |||||||||| ||||| |||||||||||| |||||| ||| ||||||||    
T  39868067 tacacataggaactaatataacagctacaacaaaatgacttccgccactagataga 39868122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 39913661 - 39913702
Alignment:
Q  111 ataccatttatagcccccaacatcaaatacatctgaacagag 152  Q
    ||||||||||||||||||| | ||||||||||||||| ||||    
T  39913661 ataccatttatagcccccagcttcaaatacatctgaatagag 39913702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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