View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3972_low_2 (Length: 230)

Name: NF3972_low_2
Description: NF3972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3972_low_2
NF3972_low_2
[»] chr4 (1 HSPs)
chr4 (11-215)||(53561213-53561417)
[»] chr8 (2 HSPs)
chr8 (11-163)||(4902770-4902922)
chr8 (23-90)||(13959898-13959965)
[»] chr3 (1 HSPs)
chr3 (11-90)||(47326728-47326807)
[»] chr7 (1 HSPs)
chr7 (11-93)||(22196076-22196158)
[»] chr6 (1 HSPs)
chr6 (11-93)||(20793429-20793511)
[»] chr5 (1 HSPs)
chr5 (11-56)||(10429425-10429470)
[»] chr1 (1 HSPs)
chr1 (23-120)||(4864387-4864484)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 53561213 - 53561417
Alignment:
Q  11 caaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaagataatggaggcttggggg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  53561213 caaagggaattcctttggggaggtgtggagggagggaggagaattagtttggtgaagtggaaggtggtgtgtcaaccgaaagataatggaggcttggggg 53561312  T
Q  111 tgagagatgtcaatgttgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaaggtggctccatgtggaaggatgttttaagggagaa 210  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53561313 tgagggatgtcaatattgttaacttaagccttctagcgaaatggaggtggaggatgttgcaaaaaggtggctccatgtggaaggatgttttgagggagaa 53561412  T
Q  211 atatg 215  Q
    |||||    
T  53561413 atatg 53561417  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 4902770 - 4902922
Alignment:
Q  11 caaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaagataatggaggcttggggg 110  Q
    |||||||| ||||||||||| ||||||||||| || ||| | |||| || || |||||||||||||||||||||||| ||||   ||||||| |||||||    
T  4902770 caaagggagttcctttggggtggtgtggagggtggtaggggcattaattgggtgaagtggaaggtggtgtgtcaacctaaaggggatggaggtttggggg 4902869  T
Q  111 tgagagatgtcaatgttgttaacttaagccttctagcgaaatggaggtggagg 163  Q
    |||| ||| | |  || || |||||||||||| |||| |||||| ||||||||    
T  4902870 tgagggatattagggtggtgaacttaagccttttagcaaaatggcggtggagg 4902922  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 13959965 - 13959898
Alignment:
Q  23 ctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaa 90  Q
    |||||||||||||| ||||||||||||| |||||||| ||  || ||||   ||||||||||||||||    
T  13959965 ctttggggaggtgttgagggagggaggaaaattagttgggttaaatggagtttggtgtgtcaaccgaa 13959898  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 47326728 - 47326807
Alignment:
Q  11 caaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaa 90  Q
    |||||||| |||||||||||||||| || |||||| |||| |||||| | || ||||||||  |||||||||||||||||    
T  47326728 caaagggagttcctttggggaggtgcggcgggaggtaggaaaattagatgggtgaagtggagtgtggtgtgtcaaccgaa 47326807  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 22196076 - 22196158
Alignment:
Q  11 caaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaaga 93  Q
    |||||||||||||||||||| ||| | |||||||||||||  ||||||| ||  |  |||||||||||||||| |||||||||    
T  22196076 caaagggaattcctttggggtggtttagagggagggaggaagattagttgggttagttggaaggtggtgtgtccaccgaaaga 22196158  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 20793429 - 20793511
Alignment:
Q  11 caaagggaattcctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaaga 93  Q
    ||||| ||||| |||||||| ||| | |||||||||||||  ||||||| ||  |  ||||||||||||||||||||||||||    
T  20793429 caaagagaatttctttggggtggtttagagggagggaggaagattagttgggttagttggaaggtggtgtgtcaaccgaaaga 20793511  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 10429425 - 10429470
Alignment:
Q  11 caaagggaattcctttggggaggtgtggagggagggaggagaatta 56  Q
    |||||||| ||||||||||||||||||| |||||| |||| |||||    
T  10429425 caaagggagttcctttggggaggtgtggcgggaggaaggaaaatta 10429470  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 4864484 - 4864387
Alignment:
Q  23 ctttggggaggtgtggagggagggaggagaattagtttggcgaagtggaaggtggtgtgtcaaccgaaagataatggaggcttgggggtgagagatgt 120  Q
    |||||||| ||||| | |||||| |||| ||||| || || ||||||||   |||||||||||||||| || |||| |||  ||||||| ||||||||    
T  4864484 ctttggggtggtgtagggggaggaaggaaaattaattgggtgaagtggagcttggtgtgtcaaccgaaggaaaatgaaggtctgggggttagagatgt 4864387  T

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