View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3973_high_2 (Length: 307)
Name: NF3973_high_2
Description: NF3973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3973_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 48723975 - 48724183
Alignment:
| Q |
84 |
ttcttagaaatcgataatttgaaggtttataagataatttgaagaccacttttaggaaagtattatatacactaaaatggaagttttatgaaagtatata |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48723975 |
ttcttagaaatcgataatttgaaggtttataagataatttgaagaccacttttaggaaagtat---atacactaaaatggaagttttatgaaagtatata |
48724071 |
T |
|
| Q |
184 |
tgatactctattaagttaccataaacaacacatacaatgaatgaaaccagattttcgattcaagagcatgacattcattatcc--atatatatataacac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
48724072 |
tgatactctattaagttaccataaacaacacatacaatgaatgaaaccagattttcgattcaagagcatggcattcattatccatatatatatataacac |
48724171 |
T |
|
| Q |
282 |
tccccacactca |
293 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48724172 |
tccccacactca |
48724183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 48723177 - 48723253
Alignment:
| Q |
11 |
cagagagcttagttagattaagtcagaacagtagagcttaactagtcccgtcaaaagacatcgtcaatctatattct |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48723177 |
cagagagcttagttagattaagtcagaacagtagagcttaactagtcccgtcaaaagacatcgtcaatctatattct |
48723253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University