View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3973_low_3 (Length: 256)

Name: NF3973_low_3
Description: NF3973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3973_low_3
NF3973_low_3
[»] chr1 (39 HSPs)
chr1 (1-242)||(7743154-7743396)
chr1 (1-114)||(21547438-21547551)
chr1 (1-114)||(31794222-31794335)
chr1 (3-114)||(6122801-6122912)
chr1 (1-94)||(12259265-12259358)
chr1 (1-114)||(16893399-16893512)
chr1 (7-114)||(52336732-52336839)
chr1 (20-114)||(12587294-12587387)
chr1 (1-71)||(33700774-33700844)
chr1 (1-107)||(51814499-51814605)
chr1 (1-114)||(25297777-25297890)
chr1 (6-114)||(6650605-6650713)
chr1 (1-113)||(17745216-17745327)
chr1 (1-88)||(15786304-15786391)
chr1 (1-71)||(8904419-8904489)
chr1 (1-114)||(4566553-4566665)
chr1 (1-114)||(40257404-40257517)
chr1 (1-110)||(44961770-44961879)
chr1 (38-114)||(7219876-7219952)
chr1 (7-71)||(8177183-8177247)
chr1 (29-113)||(9879471-9879555)
chr1 (3-71)||(17410238-17410306)
chr1 (35-114)||(952550-952629)
chr1 (31-114)||(1600250-1600333)
chr1 (3-114)||(10526830-10526941)
chr1 (35-114)||(31383756-31383835)
chr1 (1-88)||(36371475-36371562)
chr1 (3-110)||(42983336-42983443)
chr1 (3-110)||(52116743-52116850)
chr1 (1-67)||(9165200-9165266)
chr1 (1-71)||(16169979-16170049)
chr1 (1-71)||(19528328-19528398)
chr1 (1-111)||(44126400-44126510)
chr1 (16-114)||(48619167-48619265)
chr1 (1-110)||(50901586-50901695)
chr1 (49-114)||(2220025-2220090)
chr1 (55-99)||(8254854-8254898)
chr1 (38-110)||(15065007-15065079)
chr1 (82-114)||(28180845-28180877)
[»] chr3 (38 HSPs)
chr3 (143-242)||(40864833-40864932)
chr3 (3-114)||(2667869-2667980)
chr3 (1-114)||(10499067-10499180)
chr3 (34-114)||(49397499-49397579)
chr3 (29-114)||(52769941-52770026)
chr3 (3-111)||(4844472-4844580)
chr3 (3-111)||(4870168-4870276)
chr3 (1-97)||(14186653-14186748)
chr3 (3-114)||(8075085-8075196)
chr3 (3-114)||(14339617-14339728)
chr3 (1-71)||(49494147-49494217)
chr3 (4-114)||(51903836-51903946)
chr3 (1-114)||(11642167-11642280)
chr3 (1-110)||(36720386-36720495)
chr3 (49-114)||(54990755-54990820)
chr3 (1-93)||(4222146-4222238)
chr3 (35-107)||(33899653-33899725)
chr3 (3-114)||(8170679-8170790)
chr3 (3-110)||(16991549-16991656)
chr3 (4-71)||(30311314-30311381)
chr3 (29-112)||(44743815-44743898)
chr3 (1-75)||(203095-203169)
chr3 (1-110)||(2597181-2597291)
chr3 (1-114)||(10445097-10445211)
chr3 (1-71)||(27093362-27093432)
chr3 (1-114)||(13808843-13808956)
chr3 (1-114)||(31520563-31520676)
chr3 (1-98)||(31788945-31789041)
chr3 (1-114)||(46518633-46518746)
chr3 (1-114)||(47454575-47454688)
chr3 (4-70)||(11612307-11612373)
chr3 (4-114)||(12761520-12761630)
chr3 (1-75)||(15048058-15048132)
chr3 (1-71)||(28703405-28703475)
chr3 (1-71)||(37788466-37788536)
chr3 (37-114)||(44069799-44069876)
chr3 (62-114)||(7973622-7973674)
chr3 (58-114)||(36015510-36015566)
[»] chr7 (36 HSPs)
chr7 (3-110)||(45709670-45709777)
chr7 (1-114)||(41519223-41519335)
chr7 (1-114)||(15137558-15137671)
chr7 (1-113)||(20335790-20335902)
chr7 (1-110)||(24513802-24513911)
chr7 (1-114)||(30579340-30579453)
chr7 (35-114)||(9183149-9183228)
chr7 (3-114)||(43590914-43591025)
chr7 (1-71)||(26459411-26459481)
chr7 (1-107)||(42711963-42712069)
chr7 (1-114)||(2446313-2446426)
chr7 (1-114)||(15905632-15905744)
chr7 (1-114)||(25590616-25590729)
chr7 (1-110)||(41519072-41519181)
chr7 (1-110)||(48771943-48772052)
chr7 (3-110)||(35513473-35513580)
chr7 (36-114)||(7309396-7309473)
chr7 (1-71)||(18363701-18363771)
chr7 (1-71)||(22760868-22760938)
chr7 (1-71)||(23552123-23552193)
chr7 (37-114)||(2882991-2883067)
chr7 (1-114)||(17040970-17041083)
chr7 (49-114)||(21558181-21558246)
chr7 (1-114)||(30442493-30442604)
chr7 (1-114)||(43663053-43663166)
chr7 (34-114)||(27313692-27313772)
chr7 (3-71)||(37085550-37085618)
chr7 (1-65)||(42836008-42836072)
chr7 (1-44)||(22927481-22927524)
chr7 (55-114)||(37473673-37473732)
chr7 (55-113)||(4572256-4572314)
chr7 (1-99)||(7801185-7801283)
chr7 (1-71)||(23301603-23301673)
chr7 (1-71)||(39631849-39631919)
chr7 (1-71)||(43215189-43215259)
chr7 (3-71)||(35119390-35119458)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-114)||(15281-15394)
[»] chr5 (21 HSPs)
chr5 (1-114)||(16773812-16773925)
chr5 (1-114)||(29075786-29075899)
chr5 (1-114)||(6844734-6844847)
chr5 (1-114)||(22737087-22737200)
chr5 (37-110)||(29173531-29173604)
chr5 (3-111)||(14495766-14495874)
chr5 (2-114)||(22020820-22020932)
chr5 (1-88)||(25627062-25627149)
chr5 (1-114)||(3252247-3252360)
chr5 (1-114)||(8278233-8278346)
chr5 (3-114)||(1410619-1410728)
chr5 (35-114)||(43442235-43442314)
chr5 (1-99)||(43241655-43241753)
chr5 (1-114)||(21589293-21589406)
chr5 (49-114)||(24907542-24907607)
chr5 (1-71)||(87424-87494)
chr5 (1-71)||(16436623-16436692)
chr5 (1-71)||(18437090-18437160)
chr5 (55-113)||(35705045-35705103)
chr5 (58-114)||(10054109-10054165)
chr5 (17-113)||(18169793-18169887)
[»] chr8 (22 HSPs)
chr8 (1-110)||(968367-968476)
chr8 (1-104)||(23361617-23361720)
chr8 (1-114)||(3624585-3624697)
chr8 (1-114)||(16852345-16852458)
chr8 (1-114)||(44780072-44780185)
chr8 (3-114)||(11819783-11819894)
chr8 (1-114)||(2203497-2203610)
chr8 (1-71)||(19703488-19703558)
chr8 (1-110)||(20994419-20994529)
chr8 (1-114)||(8059637-8059750)
chr8 (1-114)||(8485004-8485117)
chr8 (1-114)||(18540303-18540416)
chr8 (1-114)||(28783065-28783178)
chr8 (1-114)||(29431016-29431129)
chr8 (7-99)||(35690037-35690129)
chr8 (37-111)||(6536561-6536635)
chr8 (80-114)||(7347921-7347955)
chr8 (3-89)||(42740501-42740587)
chr8 (29-114)||(3305146-3305231)
chr8 (1-114)||(4830492-4830605)
chr8 (34-114)||(16843753-16843832)
chr8 (3-71)||(27750737-27750805)
[»] chr6 (14 HSPs)
chr6 (1-110)||(33549109-33549218)
chr6 (1-114)||(6758380-6758493)
chr6 (3-114)||(21418477-21418588)
chr6 (1-111)||(12633014-12633124)
chr6 (1-110)||(12234469-12234578)
chr6 (1-114)||(31622949-31623062)
chr6 (7-114)||(28363948-28364055)
chr6 (1-71)||(12188304-12188374)
chr6 (1-115)||(14557967-14558080)
chr6 (1-114)||(1056643-1056756)
chr6 (2-71)||(11423572-11423641)
chr6 (1-114)||(30127405-30127518)
chr6 (6-110)||(3715462-3715566)
chr6 (55-99)||(12216803-12216847)
[»] chr4 (29 HSPs)
chr4 (1-114)||(7949412-7949525)
chr4 (3-114)||(49576852-49576963)
chr4 (1-110)||(21660106-21660215)
chr4 (1-110)||(21668870-21668979)
chr4 (16-114)||(51954134-51954232)
chr4 (1-114)||(28635701-28635814)
chr4 (1-71)||(19680789-19680859)
chr4 (1-71)||(37109352-37109422)
chr4 (3-110)||(18404845-18404952)
chr4 (1-107)||(9936926-9937032)
chr4 (13-107)||(13015444-13015538)
chr4 (1-71)||(19238578-19238648)
chr4 (1-114)||(37274417-37274531)
chr4 (1-115)||(37720171-37720285)
chr4 (1-110)||(31826614-31826723)
chr4 (1-114)||(46545716-46545829)
chr4 (1-110)||(51250484-51250593)
chr4 (11-71)||(38869783-38869843)
chr4 (29-75)||(24124052-24124098)
chr4 (1-71)||(31759659-31759729)
chr4 (1-71)||(47044722-47044792)
chr4 (55-113)||(47386750-47386808)
chr4 (1-107)||(55427165-55427271)
chr4 (1-114)||(13901747-13901860)
chr4 (1-114)||(24234650-24234762)
chr4 (58-111)||(30584783-30584836)
chr4 (13-114)||(30938177-30938278)
chr4 (1-114)||(45060983-45061096)
chr4 (19-75)||(42644907-42644963)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-114)||(41591-41704)
[»] chr2 (31 HSPs)
chr2 (1-114)||(29503276-29503388)
chr2 (1-110)||(42327357-42327466)
chr2 (1-114)||(1435069-1435181)
chr2 (1-114)||(42602559-42602672)
chr2 (1-110)||(3001384-3001493)
chr2 (1-114)||(11251092-11251205)
chr2 (29-114)||(25637184-25637269)
chr2 (1-114)||(37480080-37480193)
chr2 (49-114)||(38854420-38854485)
chr2 (38-114)||(33582015-33582091)
chr2 (1-71)||(4438980-4439050)
chr2 (1-71)||(14500282-14500352)
chr2 (1-71)||(34041589-34041659)
chr2 (1-71)||(39714997-39715067)
chr2 (13-110)||(28846708-28846805)
chr2 (49-114)||(38856120-38856185)
chr2 (57-113)||(31573600-31573656)
chr2 (38-114)||(35203341-35203417)
chr2 (1-60)||(1729821-1729880)
chr2 (3-110)||(21195638-21195745)
chr2 (1-71)||(16918579-16918649)
chr2 (4-114)||(21213777-21213887)
chr2 (1-71)||(23052524-23052594)
chr2 (1-71)||(40416391-40416461)
chr2 (49-114)||(2311777-2311842)
chr2 (1-114)||(7798994-7799106)
chr2 (3-95)||(9776313-9776403)
chr2 (1-106)||(26545845-26545950)
chr2 (57-114)||(37971956-37972013)
chr2 (37-114)||(41908596-41908673)
chr2 (1-109)||(19244114-19244222)
[»] scaffold0211 (1 HSPs)
scaffold0211 (1-111)||(24058-24168)
[»] scaffold0122 (1 HSPs)
scaffold0122 (3-114)||(6880-6988)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-97)||(13021-13117)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-75)||(94968-95042)
[»] scaffold0299 (1 HSPs)
scaffold0299 (2-71)||(11534-11603)
[»] scaffold0115 (1 HSPs)
scaffold0115 (49-114)||(42622-42687)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-110)||(112287-112396)
[»] scaffold0070 (1 HSPs)
scaffold0070 (3-114)||(42479-42589)
[»] scaffold0471 (1 HSPs)
scaffold0471 (29-75)||(8639-8685)
[»] scaffold0126 (1 HSPs)
scaffold0126 (13-114)||(25305-25406)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7743396 - 7743154
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  7743396 acttgggttggcctagtggtattaactaggaatttgggagtgtggtcctcctctaggtctcaagttcgattatctaaaatgtcaatttaggtgggctaac 7743297  T
Q  101 ttagcttcttcaaacnnnnnnn-cagtagatatttgacacaatacaatacctctctaacatgagcttctttatctgcttcgacatatatatagtttttga 199  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7743296 ttagcttcttcaaacaaaaaaaacagtagatatttgacacaatacaatacctctctaacatgagcttctttatctgcttcgacatatatatagtttttga 7743197  T
Q  200 gatgatcaagagcaatagctgatctgatttgcaagtctgaccc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7743196 gatgatcaagagcaatagctgatctgatttgcaagtctgaccc 7743154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 21547551 - 21547438
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  |||||| ||| || ||||| |||| |||||||||||| |||  |||| ||||||||||||||||      
T  21547551 acttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggttcgattctctctgatgccaatttaggtgggctagt 21547452  T
Q  101 ttagcttcttcaaa 114  Q
    ||| ||||||||||    
T  21547451 ttaacttcttcaaa 21547438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 31794335 - 31794222
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || |||| ||||||||||| || ||||| ||||||   ||||||||  ||  | ||||||||| ||||||||||     
T  31794335 acttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtctagagttcgattccctctggtgtcaatttgggtgggctaat 31794236  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  31794235 ttagcttcttcaaa 31794222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 6122801 - 6122912
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||| |||||||||||   || |||| ||||||||||| || ||||| |||||||||||||||||  ||    ||||||||| |||||||||| ||    
T  6122801 ttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaattt 6122900  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  6122901 agcttcttcaaa 6122912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12259265 - 12259358
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgg 94  Q
    |||||||||||| ||||| |||||||| |||||||||||||||| || ||||| | |||||| |||||||| ||   ||||||||||| |||||    
T  12259265 acttgggttggcatagtgatattaacttgggatttgggagtgtgctcctcctcgaagtctcaagttcgattctcaccgatgtcaatttgggtgg 12259358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 16893399 - 16893512
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| |||  |||||||  || | |||||||||||||  || ||||| ||||||||||||||||| |||  | |||||||||  |||||||||     
T  16893399 acttgggttgacctgttggtattggcttgagatttgggagtgtactcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaat 16893498  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  16893499 ttagcttcttcaaa 16893512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 52336839 - 52336732
Alignment:
Q  7 gttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagct 106  Q
    |||||||||||||||||  || ||||| |||||||||| || ||||  || ||||||||||||||||||  | ||||||||| | |||||||| |||  |    
T  52336839 gttggcctagtggtattggcttgggatctgggagtgtgctcctccttaagatctcaggttcgattatctctggtgtcaatttggatgggctaatttaatt 52336740  T
Q  107 tcttcaaa 114  Q
    ||||||||    
T  52336739 tcttcaaa 52336732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 12587294 - 12587387
Alignment:
Q  20 tattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||| ||| ||||| || ||||||| || ||||| ||||||||||||||||| |||  | || ||||||||||||||||| ||||||||||||||    
T  12587294 tattgacttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgattctctccggtg-caatttaggtgggctaatttagcttcttcaaa 12587387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 33700844 - 33700774
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || || || |||||||||| || ||||| |||||||||||||||||    
T  33700844 acttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgatt 33700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 51814499 - 51814605
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||  ||||||| ||| | ||| || ||||||| || ||||| ||||||||||||||||| |||  | || |||||| ||||||||||     
T  51814499 acttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaat 51814598  T
Q  101 ttagctt 107  Q
    |||||||    
T  51814599 ttagctt 51814605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25297777 - 25297890
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| ||||||||||| |||  |||| || ||||||| || ||||| |||||| ||||| |||| ||   |  ||||||||||||||| |||     
T  25297777 acttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtctgaggtttgattctcaccggcgtcaatttaggtgggataat 25297876  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  25297877 ttagcttcttcaaa 25297890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 6650605 - 6650713
Alignment:
Q  6 ggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagc 105  Q
    ||||||||||||||||||  || |||||  |||||| || || ||||| | ||||||||||||||| |||  | |||||||||||||||  ||  |||||    
T  6650605 ggttggcctagtggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggttcgattctctctggtgtcaatttaggtggattagtttagc 6650704  T
Q  106 ttcttcaaa 114  Q
    |||||||||    
T  6650705 ttcttcaaa 6650713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 17745327 - 17745216
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  || | ||||| || ||||| |||||||| |||||||| |||  | ||||||||||||| || |||     
T  17745327 acttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcgaggtctcatgttcgattctctctggtgtcaatttaggt-ggttaat 17745229  T
Q  101 ttagcttcttcaa 113  Q
    |||||||||||||    
T  17745228 ttagcttcttcaa 17745216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15786391 - 15786304
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaattt 88  Q
    ||||||||||| ||||| |||||  || ||||| |||||||||| || ||||| ||||||||||||||||| |||  | |||||||||    
T  15786391 acttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctctttggtgtcaattt 15786304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 8904419 - 8904489
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||||||||| ||||| ||| ||||| || ||||||| || ||||| |||||||| ||||||||    
T  8904419 acttgggttggcctagtagtattgacttgggatatgtgagtgtgctcctcctcaaggtctcaagttcgatt 8904489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4566553 - 4566665
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||| ||||  || || |  |||||||||| || |||||  |||||||||||||||| |||  |||||||||||| | ||| ||      
T  4566553 acttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctctctgatgtcaatttaag-gggttagt 4566651  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  4566652 ttagcttcttcaaa 4566665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 40257404 - 40257517
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || | ||  |||||||||| || ||||| |||||||| |||| ||| | |  | ||||||||| |||||||||      
T  40257404 acttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggctagt 40257503  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  40257504 ttagcttcttcaaa 40257517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 44961770 - 44961879
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| |  ||||||||| || | |||||  ||||||| || |||||  |||||||||||||||| |||    ||||||||| ||||||||||     
T  44961770 acttgggttggtcaggtggtattagcttgagatttaagagtgtgctcctcctcagggtctcaggttcgattctctctagtgtcaatttgggtgggctaat 44961869  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  44961870 ttagcttctt 44961879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 7219952 - 7219876
Alignment:
Q  38 gagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||| || ||||| | ||||||||||||||| |||  |||  |||||||||||| |||| ||||||||||||||    
T  7219952 gagtgtgctcctcctcgaagtctcaggttcgattctctttgataccaatttaggtggactaatttagcttcttcaaa 7219876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 8177247 - 8177183
Alignment:
Q  7 gttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||  || ||||| |||||||||| || ||||| |||| ||||||||||||    
T  8177247 gttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgatt 8177183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 9879471 - 9879555
Alignment:
Q  29 gggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaa 113  Q
    ||||| || ||||||  |||||||  ||||||||| |||||||||||   |||||||||| |||||||||| ||| |||||||||    
T  9879471 gggatctgagagtgtactcttccttgaggtctcagattcgattatctcttatgtcaatttgggtgggctaatttaacttcttcaa 9879555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 17410238 - 17410306
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||   | ||||| ||||||||||||| ||||| || ||||| ||||||||    
T  17410238 ttgggttggcctagtggtattggtttgggatctgggagtgtggtcctcctcgagatctcaagttcgatt 17410306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 952550 - 952629
Alignment:
Q  35 tgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||| || ||||| | |||||||||| |||| ||   |||||||||||||||||| ||| |||||||| |||||    
T  952550 tgggagtgtgctcatcctcaaagtctcaggttagattctccccgatgtcaatttaggtgggttaatttagcttcgtcaaa 952629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 1600333 - 1600250
Alignment:
Q  31 gatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||||||| || ||||  | || |||||||||||| |||  | ||||||||| | ||| |||||||||||||||||||    
T  1600333 gatttgggagtgtgctcctccttaaagtttcaggttcgattctctctggtgtcaatttggatggactaacttagcttcttcaaa 1600250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 10526830 - 10526941
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    ||||||||| | |||||||||  || ||||  ||||||| || || ||||| ||||||||| ||||||| |||  |  |||||||| |||||| ||| ||    
T  10526830 ttgggttggtccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctcagattcgattctctctggagtcaatttgggtgggttaattt 10526929  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  10526930 agcttcttcaaa 10526941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 31383835 - 31383756
Alignment:
Q  35 tgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||| || ||||   |||||||||||||||| |||  | || |||||| |||||||||||||| ||||||||||    
T  31383835 tgggagtgtgctcctccttggggtctcaggttcgattctcttaggtgccaatttgggtgggctaacttaccttcttcaaa 31383756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 36371475 - 36371562
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaattt 88  Q
    |||||||||||||||||||||||  || || |  |||||||||| || ||||| |||||| |||||||||| |||  |||| ||||||    
T  36371475 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctctgatgccaattt 36371562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 42983443 - 42983336
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||| | |||||||| ||| | ||| ||||||||||||| ||||  |||||  |||||||||| |||  | || ||||||| |||| |||| ||    
T  42983443 ttgggttggcatggtggtattgacttgagatctgggagtgtggtcctccttgaggtccgaggttcgattctctcaggtgccaatttaagtggactaattt 42983344  T
Q  103 agcttctt 110  Q
    ||||||||    
T  42983343 agcttctt 42983336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 52116850 - 52116743
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||| ||||||||  || |||| ||||||||||| || ||||| | ||||||||||| ||| ||     || ||||| ||||||||||| ||    
T  52116850 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcaattctccctagtgccaattaaggtgggctaattt 52116751  T
Q  103 agcttctt 110  Q
    ||||||||    
T  52116750 agcttctt 52116743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9165266 - 9165200
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttc 67  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || ||||| | |||||||||||    
T  9165266 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttc 9165200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16170049 - 16169979
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||| |||| |||||||| ||| ||||  |||||||||| || ||||| |||| ||||||||||||    
T  16170049 acttgggttagcctggtggtattgacttgggacctgggagtgtgttcctcctcaaggtttcaggttcgatt 16169979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19528398 - 19528328
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||| ||||||||  || ||||| |  ||||||| || ||||| |||||||||||||||||    
T  19528398 acttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgatt 19528328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44126400 - 44126510
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| |||||||| ||  ||||  |||||||||| || ||| | ||||||||| || |||| |||    || |||||||||| ||||||     
T  44126400 acttgggttggcctggtggtattgacctgggacctgggagtgtgctcctccacgaggtctcagatttgattctctctagtgccaatttaggtaggctaat 44126499  T
Q  101 ttagcttcttc 111  Q
    |||||||||||    
T  44126500 ttagcttcttc 44126510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 48619265 - 48619167
Alignment:
Q  16 gtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||| ||| | || ||||||||||| | |||||| || |||||||||| |||||||  | |||||||||  |||| |||| ||| ||||||||||    
T  48619265 gtggtattgacttgagacttgggagtgtgtttttcctcaagatctcaggttctattatctccggtgtcaatttgagtggactaatttaacttcttcaaa 48619167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 50901586 - 50901695
Alignment:
Q  1 acttgggttggcctagtggta-ttaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    ||||||||||||||||||||| ||  || ||||  ||| |||||| || ||||| ||||||||  ||||||| |||  | || |||||||||||||||||    
T  50901586 acttgggttggcctagtggtaattggcttgggacctggtagtgtgctcctcctcgaggtctcaaattcgattctctcag-tgccaatttaggtgggctaa 50901684  T
Q  100 cttagcttctt 110  Q
     ||||||||||    
T  50901685 tttagcttctt 50901695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 2220025 - 2220090
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| ||||||||||||||||| |||   |||||||||||  |||||||| |||| |||||||||    
T  2220025 tcctcgaggtctcaggttcgattctctccaatgtcaatttaaatgggctaatttagtttcttcaaa 2220090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 8254898 - 8254854
Alignment:
Q  55 aggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    |||||||||||||||||||||  | ||||||||| ||||||||||    
T  8254898 aggtctcaggttcgattatctctggtgtcaatttcggtgggctaa 8254854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 15065007 - 15065079
Alignment:
Q  38 gagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttctt 110  Q
    ||||||| || ||||| ||||||||||||| ||| ||   | ||||||||| |||||||||| ||||||||||    
T  15065007 gagtgtgctcatcctcaaggtctcaggttcaattttccccggtgtcaatttgggtgggctaatttagcttctt 15065079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 28180845 - 28180877
Alignment:
Q  82 tcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||||||||||||||||||| |||||||||    
T  28180845 tcaatttaggtgggctaacttagtttcttcaaa 28180877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 40864932 - 40864833
Alignment:
Q  143 acaatacctctctaacatgagcttctttatctgcttcgacatatatatagtttttgagatgatcaagagcaatagctgatctgatttgcaagtctgaccc 242  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40864932 acaatacctctctaacatgagcttctttatctgcttccacatatatgtagtttttgagatgatcaagagcaatagctgatctgatttgcaattctgaccc 40864833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 2667869 - 2667980
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||| ||||||||  || ||||| |||||||||| |||||||| |||||||||||||||||||||    |||||||||||||||||||  ||    
T  2667869 ttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagttt 2667968  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  2667969 agcttcttcaaa 2667980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 10499180 - 10499067
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || ||||| ||||||| || |||||||  ||||||||||||||||| |||  ||||||||||| ||||||||||     
T  10499180 acttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggtgggctaat 10499081  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  10499080 ttagcttcttcaaa 10499067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 49397579 - 49397499
Alignment:
Q  34 ttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||||||| |  ||||| |||||||| ||||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  49397579 ttgggagtgtgcttctcctcgaggtctcatgttcgattatcttagatgtcaatttaggtggactaatttagcttcttcaaa 49397499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 52770026 - 52769941
Alignment:
Q  29 gggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| |||||||||| || ||||  ||||||||||||||||| |||    |||||||||||||||||||| ||||||||||||||    
T  52770026 gggatctgggagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttcttcaaa 52769941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 4844580 - 4844472
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    ||||||||| || |||||||| ||| ||||| |||||||||| || ||||| |||||||||| |||||| |||  | || ||||||  ||||||||| ||    
T  4844580 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaattt 4844481  T
Q  103 agcttcttc 111  Q
    |||||||||    
T  4844480 agcttcttc 4844472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 4870276 - 4870168
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    ||||||||| || |||||||| ||| ||||| |||||||||| || ||||| |||||||||| |||||| |||  | || ||||||  ||||||||| ||    
T  4870276 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaattt 4870177  T
Q  103 agcttcttc 111  Q
    |||||||||    
T  4870176 agcttcttc 4870168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14186653 - 14186748
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggct 97  Q
    |||||||||||||||||||||||  || ||||  ||| |||||| || ||||| ||||||||||||||||| |||  | ||||||||||||||||||    
T  14186653 acttgggttggcctagtggtattgtcttgggacctgg-agtgtgctcctcctcaaggtctcaggttcgattctctccggtgtcaatttaggtgggct 14186748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 8075196 - 8075085
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||| |||||||||||   || |||| ||||||||||| || ||||| |||| ||||||||||||  ||    ||||||||| |||||||||| ||    
T  8075196 ttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtttcaggttcgattccctctagtgtcaatttgggtgggctaattt 8075097  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  8075096 agcttcttcaaa 8075085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 14339617 - 14339728
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||| ||||||| ||||||||  || |||||||||||||||| || ||||| | ||||||||||||||| ||     || ||||| ||||||||||| ||    
T  14339617 ttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaattt 14339716  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  14339717 agcttcttcaaa 14339728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49494217 - 49494147
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||| ||||||||||||| ||| |  ||||||||||||| |||||||| |||||||||||| ||||    
T  49494217 acttgggttagcctagtggtattgacttgaaatttgggagtgtgctcttcctcgaggtctcaggtttgatt 49494147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 51903946 - 51903836
Alignment:
Q  4 tgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactta 103  Q
    ||||||| |||  |||||||  || ||||| |||||||||| || |||||  |||||||||||||||| |||  | |||||||||  ||||||||| |||    
T  51903946 tgggttgacctgttggtattggcttgggatctgggagtgtgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaattta 51903847  T
Q  104 gcttcttcaaa 114  Q
    |||||||||||    
T  51903846 gcttcttcaaa 51903836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 11642280 - 11642167
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||| |||||||| |||||| |||| ||||| || || |||| || ||||| |||||||||||||||||||||    |||||||||| | ||| ||      
T  11642280 acttggattggcctactggtataaacttgggatctgagattgtgatcctcctcaaggtctcaggttcgattatctttagtgtcaatttaagagggttagt 11642181  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  11642180 ttagcttcttcaaa 11642167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 36720386 - 36720495
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || ||||||||  || ||||| |||||||||| || ||||| |||| |||||||||||| |||    ||||||||||||||||||       
T  36720386 acttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttaggtgggctggt 36720485  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  36720486 ttagcttctt 36720495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 54990755 - 54990820
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| ||||||||||||||||| ||   |||| ||||||||||||||||| ||||||||||||||    
T  54990755 tcctcaaggtctcaggttcgattctcctcgatggcaatttaggtgggctaatttagcttcttcaaa 54990820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4222146 - 4222238
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtg 93  Q
    |||||||||||| ||||||||||  || ||||| |||||||||| || ||||| | |||| |||||||||| |||  | ||||||||||||||    
T  4222146 acttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtcaatttaggtg 4222238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 33899653 - 33899725
Alignment:
Q  35 tgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagctt 107  Q
    |||||||||| || ||||||||||||||||||||||| |||  | ||||||||| |||| ||||| |||||||    
T  33899653 tgggagtgtgctcctcctctaggtctcaggttcgattctctttggtgtcaatttgggtgtgctaatttagctt 33899725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 8170679 - 8170790
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||||||||||||  || |  | ||||||||||| || | ||| |||||||||||||||||  ||  | ||||||||| |||||||||| ||    
T  8170679 ttgggttggcctagtggtattggcttgaaacttgggagtgtgctcctactcaaggtctcaggttcgatttcctctggtgtcaatttgggtgggctaattt 8170778  T
Q  103 agcttcttcaaa 114  Q
    |  |||||||||    
T  8170779 aaattcttcaaa 8170790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 16991549 - 16991656
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||| ||||||||  || ||||| |||||||||  ||||| |  ||||||||| || |||| |||  |||| ||||||| ||||||||| ||    
T  16991549 ttgggttggcctggtggtattggcttgggatctgggagtgtactcttctttgaggtctcagttttgattctctccgatgccaatttatgtgggctaattt 16991648  T
Q  103 agcttctt 110  Q
    ||||||||    
T  16991649 agcttctt 16991656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 30311314 - 30311381
Alignment:
Q  4 tgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||   || ||||| |||||||||| || ||||| |||||||||||||||||    
T  30311314 tgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 30311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 44743898 - 44743815
Alignment:
Q  29 gggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttca 112  Q
    ||||| |||||||||| || ||||| |||||||||||||||||||||    || |||||| |||||| ||| ||||||||||||    
T  44743898 gggatctgggagtgtgctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttcttca 44743815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 203095 - 203169
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatct 75  Q
    ||||||||||||||||||||||| ||| |||||  ||||||||| | |||||  |||| | ||||||||||||||    
T  203095 acttgggttggcctagtggtattgacttgggatcagggagtgtgcttttccttaaggtttgaggttcgattatct 203169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2597291 - 2597181
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtggg-ctaa 99  Q
    ||||||||||| || ||||||||  ||  |||||| |||||||| || ||||  ||||||||||||||| | ||||  |||| |||||||||||| ||||    
T  2597291 acttgggttggtctggtggtattggcttcggatttaggagtgtgctcctccttgaggtctcaggttcgaatctctactatgtaaatttaggtgggactaa 2597192  T
Q  100 cttagcttctt 110  Q
     ||||||||||    
T  2597191 tttagcttctt 2597181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 10445211 - 10445097
Alignment:
Q  1 acttgggttggcctagtggta-ttaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    ||||||||||||||||||| | ||  || ||||  |||||||||| || ||||| ||||||||||||||||| |||  | ||  |||||  |||||||||    
T  10445211 acttgggttggcctagtggcaattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaa 10445112  T
Q  100 cttagcttcttcaaa 114  Q
     ||||||||||||||    
T  10445111 tttagcttcttcaaa 10445097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27093432 - 27093362
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || || | ||||||||||| || ||||| |||||||||||| ||||    
T  27093432 acttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtttgatt 27093362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13808956 - 13808843
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || ||  |||| ||| ||||| ||| |||||| || ||||||||||||||||||| ||| |||   |||||||||| | |||  |||     
T  13808956 acttgggttggtctggtcttattgacttgggatctggcagtgtgctcctcctctaggtctcaggttcaattctctctaatgtcaatttggatggattaat 13808857  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  13808856 ttagcttcttcaaa 13808843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 31520676 - 31520563
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| |||| |||  || ||||| |||||||||| || ||||| |||||| ||||| |||| |||    |||||||||  |||||||||     
T  31520676 acttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaatttgagtgggctaat 31520577  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||| ||||||    
T  31520576 ttagctttttcaaa 31520563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 31789041 - 31788945
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggcta 98  Q
    |||||||||||||||||| ||||  || ||||| |||||||||| || ||||| |||| | ||||| ||||||||  | ||||||||| |||||||||    
T  31789041 acttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctcgaggttttaggtttgattatctctg-tgtcaatttgggtgggcta 31788945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 46518633 - 46518746
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||| ||||||||||  || ||||| |||||||||| || ||||| |||| ||||||| |||| |||  |||| ||||||  | ||| ||      
T  46518633 acttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgattctctctgatgccaatttgagggggttagt 46518732  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  46518733 ttagcttcttcaaa 46518746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 47454688 - 47454575
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||  |||||||||||  || | ||| | |||||||| || ||||| ||||||||||||||||| ||    ||| ||||||||||||| ||      
T  47454688 acttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagt 47454589  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  47454588 ttagcttcttcaaa 47454575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 11612307 - 11612373
Alignment:
Q  4 tgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgat 70  Q
    ||||||||||| |||||||| ||| ||||  |||||||||| || ||||  ||||||||||||||||    
T  11612307 tgggttggcctggtggtattcacttgggagctgggagtgtgctcctccttaaggtctcaggttcgat 11612373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 12761520 - 12761630
Alignment:
Q  4 tgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactta 103  Q
    |||||||| || |||||||| ||| ||||  |||||||||| || ||||  || |||||||||||||| ||   | || ||||||||||||||||  ||     
T  12761520 tgggttggtctggtggtattgacttgggacctgggagtgtgttcctccttgagctctcaggttcgattttccccggtgccaatttaggtgggctagtttt 12761619  T
Q  104 gcttcttcaaa 114  Q
    |||||||||||    
T  12761620 gcttcttcaaa 12761630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15048132 - 15048058
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatct 75  Q
    |||||||||||| || ||||||   || ||||| ||||| |||| || ||||| |||||||||||||||||||||    
T  15048132 acttgggttggcttaatggtataggcttgggatctgggaatgtgctcctcctcaaggtctcaggttcgattatct 15048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28703475 - 28703405
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||| | |||| ||||| || ||||| |||||||||| || || || |||||||||||||||||    
T  28703475 acttgggttggtccagtgatattagcttgggatctgggagtgtgctcctcttcaaggtctcaggttcgatt 28703405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37788536 - 37788466
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||||| ||||||||| ||| || |  | |||||||| || ||||| |||||||||||||||||    
T  37788536 acttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgatt 37788466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 44069799 - 44069876
Alignment:
Q  37 ggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||| || ||||| |||||||||||| |||| | |  | || ||||||||||||||||  ||||||||||||||    
T  44069799 ggagtgtgctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttcttcaaa 44069876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 7973622 - 7973674
Alignment:
Q  62 aggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||| |||  ||||||||||| ||||| |||| ||||||||||||||    
T  7973622 aggttcgattctctctgatgtcaatttgggtggactaatttagcttcttcaaa 7973674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 36015510 - 36015566
Alignment:
Q  58 tctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||| ||||| |||  | |||||||||||||||||||| || |||||||||||    
T  36015510 tctcaggtacgattctcttcggtgtcaatttaggtgggctaattttgcttcttcaaa 36015566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 45709777 - 45709670
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||||||||||||| || ||||| || ||||||| || ||||| |||||||||||||||||||||  |||  ||||||||||||||||||||    
T  45709777 ttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcgaggtctcaggttcgattatctccgataccaatttaggtgggctaactt 45709678  T
Q  103 agcttctt 110  Q
    ||||||||    
T  45709677 agcttctt 45709670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 41519335 - 41519223
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||| || ||||| |||||||||||||| || |||  | ||||||||||||||||||||     
T  41519335 acttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctcaggttcgcttctctctg-tgtcaatttaggtgggctaat 41519237  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  41519236 ttagcttcttcaaa 41519223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 15137558 - 15137671
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| |||||| | ||| ||||||| |||||||| || ||||| |||||||||||| |||| |||  | ||||||||| ||||||||||     
T  15137558 acttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaat 15137657  T
Q  101 ttagcttcttcaaa 114  Q
    |||| |||||||||    
T  15137658 ttagtttcttcaaa 15137671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 20335902 - 20335790
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| |||| ||||||  || |||| ||||||||||| || ||||| ||||||||||||||||| ||   ||||||||||| | ||||||||     
T  20335902 acttgggttggtctagaggtattggcttgggacttgggagtgtgctcctcctcgaggtctcaggttcgattctcaccgatgtcaatttggatgggctaat 20335803  T
Q  101 ttagcttcttcaa 113  Q
    ||| |||||||||    
T  20335802 ttaacttcttcaa 20335790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 24513802 - 24513911
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || | |||||||||||||  |  ||||  ||||||||||||||||| ||   ||||||||||| ||||||||||     
T  24513802 acttgggttggcctagtggtattggcttgagatttgggagtgtacttctccttgaggtctcaggttcgattttcactgatgtcaatttgggtgggctaat 24513901  T
Q  101 ttagcttctt 110  Q
    ||| ||||||    
T  24513902 ttaacttctt 24513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 30579340 - 30579453
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || | ||  |||||||||   | ||||| ||||||||||||||||| |||  | || |||||||||||||||||     
T  30579340 acttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgattttctctggtgccaatttaggtgggctaat 30579439  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  30579440 ttagcttcttcaaa 30579453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 9183228 - 9183149
Alignment:
Q  35 tgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||| || ||||| | |||||||||||||||||||  | ||||||||| |||||||||| |||| |||||||||    
T  9183228 tgggagtgtgctcctcctcaaagtctcaggttcgattatctctggtgtcaatttgggtgggctaatttagtttcttcaaa 9183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 43590914 - 43591025
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||| ||||||||  || |||| ||||||||||| || ||||| | ||||||||||||||| ||     || ||||| ||||||||||| ||    
T  43590914 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaattt 43591013  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  43591014 agcttcttcaaa 43591025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 26459481 - 26459411
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || ||||| |||||||||||||||||    
T  26459481 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 26459411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 42711963 - 42712069
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||| ||||||||||| || || |  |||||||||| || ||||| |||||||| |||||||| ||     ||||||||||||||||||||     
T  42711963 acttgggttggcttagtggtattagcttggtacatgggagtgtgctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaat 42712062  T
Q  101 ttagctt 107  Q
    |||||||    
T  42712063 ttagctt 42712069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 2446313 - 2446426
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| ||  |||||||  || |||| ||||||||||| || ||||| || ||||| |||||||| |||  | || | |||||||||||||||     
T  2446313 acttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagttcgattctctccggtgccgatttaggtgggctaat 2446412  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  2446413 ttagcttcttcaaa 2446426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 15905744 - 15905632
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| | ||||||  || ||||  |||||||||| || |||| |||||||||||||||||| ||    |||||||||| |||||| |||     
T  15905744 acttgggttggcctggcggtattggcttgggacctgggagtgtgctcctcct-taggtctcaggttcgattctccctaatgtcaatttgggtgggttaat 15905646  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  15905645 ttagcttcttcaaa 15905632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25590616 - 25590729
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| |||  |||||||  || | ||| |||||||||| || ||||| ||||||| ||||||||| |||  | |||||||||  |||||||||     
T  25590616 acttgggttgacctgttggtattggcttgagatctgggagtgtgctcctcctcgaggtctcgggttcgattttcttcggtgtcaatttgagtgggctaat 25590715  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  25590716 ttagcttcttcaaa 25590729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41519181 - 41519072
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||| ||||||||||||| || |  || |||||||  ||||||| || | ||| ||||||||| |||||||||||  | ||||||||| ||||||||||     
T  41519181 actttggttggcctagtgatactggcttgggatttaagagtgtgctccttctcaaggtctcagattcgattatctccggtgtcaatttgggtgggctaat 41519082  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  41519081 ttagcttctt 41519072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 48771943 - 48772052
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||| | ||||||||  || ||||| |||||||||| || ||||  ||||||||||||||||||||     |  |||||||||||||||||     
T  48771943 acttgggttggcttggtggtattggcttgggatctgggagtgtgctcctccttgaggtctcaggttcgattatcccaagtaccaatttaggtgggctaat 48772042  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  48772043 ttagcttctt 48772052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 35513473 - 35513580
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||||||||||||  || |||| ||| ||||||| || ||||| |  ||||| |||||||| |||  ||||  ||||||||||| |||| ||    
T  35513473 ttgggttggcctagtggtatttgcttgggacttgagagtgtgctcctcctcgatatctcatgttcgattttctccgatggtaatttaggtggactaattt 35513572  T
Q  103 agcttctt 110  Q
    ||||||||    
T  35513573 agcttctt 35513580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 7309396 - 7309473
Alignment:
Q  36 gggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||||| || ||||| |||||||| |||||||| |||  | |||||||||| ||||||||| ||||||||||||||    
T  7309396 gggagtgtgctcctcctcgaggtctcaagttcgattctctccg-tgtcaatttaagtgggctaatttagcttcttcaaa 7309473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18363701 - 18363771
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||||||||||||||   || | |||||||||||||| || ||||| |||||||||||| ||||    
T  18363701 acttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtttgatt 18363771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22760868 - 22760938
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||| || |||||||| ||| ||||  |||||||||| || ||||| |||||||||||||||||    
T  22760868 acttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 22760938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23552123 - 23552193
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||| |||| ||| ||||  |||||||||| || ||||| |||||||| ||||||||    
T  23552123 acttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgatt 23552193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 2882991 - 2883067
Alignment:
Q  37 ggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||| || ||||| ||||||||||||| ||| |||  | || ||||||||||||||| ||||||||||||||||    
T  2882991 ggagtgtgctcctcctcaaggtctcaggttcaattctctctggtggcaatttaggtgggct-acttagcttcttcaaa 2883067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 17041083 - 17040970
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| ||||||| |||  || ||||| ||| |||||| || ||||| ||||||||||||||||| |||    || |||||| ||||||  ||     
T  17041083 acttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctctcaagtgccaatttgggtgggtcaat 17040984  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  17040983 ttagcttcttcaaa 17040970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 21558181 - 21558246
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| ||||||||||||||||| |||  | || ||||||||||||| ||| ||||||||||||||    
T  21558181 tcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttcttcaaa 21558246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 30442493 - 30442604
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||| |||||||||  || ||||  ||||||| || || ||||| |||||| |||||||||| ||| ||| |||||||| |||||| |||     
T  30442493 acttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttcgattctct-gga-gtcaatttgggtgggttaat 30442590  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||| ||||||    
T  30442591 ttagcttattcaaa 30442604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 43663166 - 43663053
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||  ||||||| ||| ||||  | |||| |||||| ||||| || |||||||||||| | |||  | | ||||||| ||||| ||||     
T  43663166 acttgggttggcctgatggtattgacttgggacctaggagcgtggtcctcctcgagatctcaggttcgaatctctccggtatcaatttgggtggactaat 43663067  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  43663066 ttagcttcttcaaa 43663053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 27313772 - 27313692
Alignment:
Q  34 ttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||| || || ||||| |||| |||| ||||||| |||  |||| ||||||||||| ||||| ||||||||||||||    
T  27313772 ttgggagtttgctcctcctcaaggtttcagattcgattctctctgatgccaatttaggtgagctaatttagcttcttcaaa 27313692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 37085618 - 37085550
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||| | ||||||||  || |||||||||||||||| || ||||| |||| ||||||||||||    
T  37085618 ttgggttggcatggtggtattggcttgggatttgggagtgtgctcatcctcgaggtttcaggttcgatt 37085550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42836072 - 42836008
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggt 65  Q
    |||||||||||||||||||||||  || ||||  |||||||||| |||||||| ||| |||||||    
T  42836072 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcttcctcaaggcctcaggt 42836008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22927481 - 22927524
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtg 44  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  22927481 acttgggttggcctagtggtattaacttgggatctaggagtgtg 22927524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 37473673 - 37473732
Alignment:
Q  55 aggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||||||||||||| ||    ||||||||||||||||| ||| ||||||||||||||    
T  37473673 aggtctcaggttcgattctccctaatgtcaatttaggtgggttaatttagcttcttcaaa 37473732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 4572314 - 4572256
Alignment:
Q  55 aggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaa 113  Q
    ||||||||||||||||| |||  | ||||||||| |||||||||| ||| |||||||||    
T  4572314 aggtctcaggttcgattctctccggtgtcaatttgggtgggctaatttatcttcttcaa 4572256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 7801185 - 7801283
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    |||||| ||||||| |||||||| ||| ||||  |||||||||| || || || |||||||||||||||    ||  |||||||||||| |||||||||    
T  7801185 acttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtctcaggttcgaacccctccgatgtcaatttaagtgggctaa 7801283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23301673 - 23301603
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||| |||||||| ||| |||| ||||||||||| || ||||  |||||||| ||| ||||    
T  23301673 acttgggttggcctggtggtattgacttgggacttgggagtgtgctcctccttgaggtctcaagtttgatt 23301603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39631849 - 39631919
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || ||||  |||||||  | || ||||| |||||||||||||||||    
T  39631849 acttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcgatt 39631919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43215189 - 43215259
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||| |||||||||||  || ||||  | |||||||| || ||||| |||||||||||||||||    
T  43215189 acttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgatt 43215259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 35119390 - 35119458
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||||||||||||| ||| ||||| |||| || || || ||||| || | ||||||||||||    
T  35119390 ttgggttggcctagtggtattgacttgggatctgggtgtatgctcatcctcaagatttcaggttcgatt 35119458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 15394 - 15281
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || ||||||||  || ||||  |||||||||| || ||||| ||||||||||||||||| ||| ||||| |||||||||||||||||     
T  15394 acttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaat 15295  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  15294 ttagcttcttcaaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 16773812 - 16773925
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||| ||||| || |||||||| ||| ||||  |||||||||| || ||||| ||||||||||||||||| |||  |||| |||||||||||||||||     
T  16773812 acttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaat 16773911  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  16773912 ttagcttcttcaaa 16773925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 29075786 - 29075899
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||| |||||||||||||  || ||||| |||||||||| || ||||| || ||||| |||||||| |||  | || |||||||| ||||||||     
T  29075786 acttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatttagatgggctaat 29075885  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  29075886 ttagcttcttcaaa 29075899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6844734 - 6844847
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||  |||||||| ||| || ||||||||||||| || ||||| |||||| ||||||||||||||    || ||||||||||||  ||      
T  6844734 acttgggttggccaggtggtattgacttggaatttgggagtgtgttcctcctcgaggtctaaggttcgattatctctcgtgccaatttaggtggattagt 6844833  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  6844834 ttagcttcttcaaa 6844847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 22737087 - 22737200
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| |||||||||||  || |||| |||| |||||| || ||| | | |||||||||||||||  ||  ||| |||||||||||||| |||     
T  22737087 acttgggttggtctagtggtattggcttgggacttggaagtgtgctcctccccaatgtctcaggttcgattccctctgatatcaatttaggtgggttaat 22737186  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  22737187 ttagcttcttcaaa 22737200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 29173531 - 29173604
Alignment:
Q  37 ggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttctt 110  Q
    |||||||| || ||||| |||| ||||||||||||||||  | |||||||||||||||||||| ||||||||||    
T  29173531 ggagtgtgctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagcttctt 29173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 14495874 - 14495766
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    ||||||||| || |||||||| ||| ||||| |||||||||| || ||||| ||||||||| || |||| |||  |||| |||||||| |||||||  ||    
T  14495874 ttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatttgattctctccgatgccaatttagatgggctagttt 14495775  T
Q  103 agcttcttc 111  Q
    |||||||||    
T  14495774 agcttcttc 14495766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 22020932 - 22020820
Alignment:
Q  2 cttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaact 101  Q
    ||||||||||| ||||||||||| || ||||| |||||||||| || ||||  | ||||||| ||||||| |||    ||| |||||||||||||||| |    
T  22020932 cttgggttggcatagtggtattagcttgggatctgggagtgtgctcctccttgaagtctcagattcgattctctccagtgttaatttaggtgggctaatt 22020833  T
Q  102 tagcttcttcaaa 114  Q
    ||| |||||||||    
T  22020832 tagtttcttcaaa 22020820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 25627062 - 25627149
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaattt 88  Q
    |||||||||||||||||||||||  || || | ||||||||||| || ||||| ||||||||||||||||| |||  | |||||||||    
T  25627062 acttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaattt 25627149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 3252360 - 3252247
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||||||||||| ||| | || |||||||||   ||||||||  | |||||||||||||| |||  |||| |||||  | ||||||||     
T  3252360 acttgggttggcctagtggtattgacttgagacttgggagtgcactcttcctcaggctctcaggttcgattctctctgatgccaattcggatgggctaat 3252261  T
Q  101 ttagcttcttcaaa 114  Q
    |||| |||||||||    
T  3252260 ttagtttcttcaaa 3252247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 8278346 - 8278233
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| ||  |||||||  || |||| ||||||||||| || ||||| || ||||| ||| ||||||||  | || | |||||||||||||||     
T  8278346 acttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagtttgattatctccggtgccgatttaggtgggctaat 8278247  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  8278246 ttagcttcttcaaa 8278233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 1410728 - 1410619
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    ||||||||| || |||||||| ||| ||||| |||||||||| || ||||| ||||||||| ||||||| |||  | ||||||||  ||| |||||| ||    
T  1410728 ttgggttggtctggtggtattgacttgggatatgggagtgtgctcctcctcgaggtctcag-ttcgattctctgtggtgtcaattg-ggtaggctaattt 1410631  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  1410630 agcttcttcaaa 1410619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 43442235 - 43442314
Alignment:
Q  35 tgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||| || ||||| ||||||||||||||||| |||  | ||||||||| | |||||||| |||| |||||||||    
T  43442235 tgggagtgtgctcctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaatttagtttcttcaaa 43442314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 43241753 - 43241655
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    ||||||||||| ||||||||||| ||| ||||| | ||||||||  ||||||  ||||||||||||| ||| |||  |||| |||||||| ||| ||||    
T  43241753 acttgggttggtctagtggtattgacttgggatcttggagtgtgcccttccttgaggtctcaggttcaattctcttcgatgccaatttagctggactaa 43241655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 21589293 - 21589406
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || ||||  ||||||| || |  ||||| | |||||||||||||||  ||  | || ||||||||||||||||      
T  21589293 acttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgattccctctggtgccaatttaggtgggctagt 21589392  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  21589393 ttagcttcttcaaa 21589406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 24907542 - 24907607
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| || |||||||||||||||||   |||| ||||||||||||||||| ||||||| ||||||    
T  24907542 tcctcaagttctcaggttcgattatccttgatgccaatttaggtgggctaatttagcttattcaaa 24907607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 87494 - 87424
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||| ||||||||||||||||||  || || || |||||||||| || ||||| |||||||||||| ||||    
T  87494 acttcggttggcctagtggtattgccttggaatctgggagtgtgctcctcctcaaggtctcaggtttgatt 87424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16436623 - 16436692
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || |||| || |||||||| || ||||| |||||||| ||||||||    
T  16436623 acttgggttggcctagtggtattggcttgggactt-ggagtgtgctcctcctcaaggtctcatgttcgatt 16436692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18437090 - 18437160
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||| |||||||||||||||||||||| |||| ||| ||||||| || ||||| | || || |||||||||    
T  18437090 acttaggttggcctagtggtattaacttgggacttgagagtgtgctcctcctcaaagtttcgggttcgatt 18437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 35705045 - 35705103
Alignment:
Q  55 aggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaa 113  Q
    ||||||||||||||||| ||   | ||||||||| |||||||||| |||||||||||||    
T  35705045 aggtctcaggttcgattctccccggtgtcaatttgggtgggctaatttagcttcttcaa 35705103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 10054109 - 10054165
Alignment:
Q  58 tctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||||||| |||  ||| |||| || |||||||||| ||||||||||||||    
T  10054109 tctcaggttcgattctctccgatatcaacttgggtgggctaatttagcttcttcaaa 10054165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 18169887 - 18169793
Alignment:
Q  17 tggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaa 113  Q
    ||||||| ||| ||||| ||||||||||||| || ||  ||||| |||||||||| |||  | || ||| ||||||||||||| |||||||||||||    
T  18169887 tggtattgacttgggatctgggagtgtggtcctcttcgtggtct-aggttcgattctctcag-tgccaaattaggtgggctaatttagcttcttcaa 18169793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 968367 - 968476
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||| |||||||| ||||||||  || ||||  |||||||||| || ||||| ||||||||||||||||| |||  |||| |||||||||||||||||     
T  968367 acttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaat 968466  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  968467 ttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 23361720 - 23361617
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| ||| |||||||| ||| ||||| |||||||||| || ||||| ||||||||||||| ||| |||  | ||||||||||||||||||||     
T  23361720 acttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaat 23361621  T
Q  101 ttag 104  Q
    ||||    
T  23361620 ttag 23361617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 3624585 - 3624697
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || || || ||||||||||||||||| |||  |  |||||||||||||||||||     
T  3624585 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctccg-ggtcaatttaggtgggctaat 3624683  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||| ||||||    
T  3624684 ttagctttttcaaa 3624697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 16852345 - 16852458
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || ||||| ||||||||||||||||| ||     || ||||||||||||||||      
T  16852345 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctatt 16852444  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  16852445 ttagcttcttcaaa 16852458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 44780185 - 44780072
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||||||| |||  || |||| ||||||||||| || ||||| |||||||||||| ||||  ||    ||||||||| ||||||||||     
T  44780185 acttgggttggcctagtggcattggcttgggacttgggagtgtgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttgggtgggctaat 44780086  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  44780085 ttagcttcttcaaa 44780072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 11819783 - 11819894
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||| |||||||||||   || |||| ||||||||||| || ||||| |||||||||||||||||  ||    ||||||||| |||||||||| ||    
T  11819783 ttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaattt 11819882  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  11819883 agcttcttcaaa 11819894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 2203497 - 2203610
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || ||||| |||||||||| || ||| ||   | || |||||| ||||||||||     
T  2203497 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaat 2203596  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||| ||||||    
T  2203597 ttagcttattcaaa 2203610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19703558 - 19703488
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || ||||  || ||||||| || ||||| |||||||||||||||||    
T  19703558 acttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 19703488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 20994529 - 20994419
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggt-cttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    ||||||||||||||||||||||| ||| ||||  |||||||||| | || |||| | |||||||| ||||||||||  | |  |||||| | ||||||||    
T  20994529 acttgggttggcctagtggtattgacttgggacctgggagtgtgctcctccctcaaagtctcaggatcgattatctctggtaccaatttggatgggctaa 20994430  T
Q  100 cttagcttctt 110  Q
     ||||||||||    
T  20994429 tttagcttctt 20994419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 8059637 - 8059750
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||  ||||||| ||| || || || ||||||| || ||||| ||||||||||||| ||| ||   |||||||||||  ||| ||||      
T  8059637 acttgggttggcctgatggtattgacttggcatgtgagagtgtgatcctcctcaaggtctcaggttccattctccctgatgtcaatttgagtgagctagt 8059736  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  8059737 ttagcttcttcaaa 8059750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 8485004 - 8485117
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || ||||  || ||||||| || || |  ||||||||  ||||||| |||  | || |||||||||||||||||     
T  8485004 acttgggttggcctggtggtatttgcttgggacctgtgagtgtgctcctctttgaggtctcattttcgattctctccggtgccaatttaggtgggctaat 8485103  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  8485104 ttagcttcttcaaa 8485117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 18540303 - 18540416
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  |||||||||  |  ||||| ||||||||||||||||| |||  | || ||||||  | ||| |||     
T  18540303 acttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctctctggtgccaatttgagagggttaat 18540402  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  18540403 ttagcttcttcaaa 18540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 28783065 - 28783178
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||| | ||||||||  || | ||  |||||||||| || ||||| |||||||| |||||||| ||   | || |||||| ||||||||||     
T  28783065 acttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaat 28783164  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  28783165 ttagcttcttcaaa 28783178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 29431016 - 29431129
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| | ||||||  || |||| ||||||||||| || ||||  ||| ||||||||||||| |||  | ||  |||||  |||||||||     
T  29431016 acttgggttggcctggcggtattggcttgggacttgggagtgtgctcctccttgaggcctcaggttcgattctctttggtgctaatttgagtgggctaat 29431115  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  29431116 ttagcttcttcaaa 29431129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 35690129 - 35690037
Alignment:
Q  7 gttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    |||||||||||||||||  || ||||| |||| || || || ||||| ||||||||||||||||| |||  | |||||||||| || ||||||    
T  35690129 gttggcctagtggtattggcttgggatctgggtgtttgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaagtaggctaa 35690037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 6536561 - 6536635
Alignment:
Q  37 ggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttc 111  Q
    |||||||| || ||||| ||||||||||||| ||| |||  | || ||||||||||||| ||| |||||||||||    
T  6536561 ggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttcttc 6536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 7347921 - 7347955
Alignment:
Q  80 tgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||||||||||||||| ||||||||||||||    
T  7347921 tgtcaatttaggtgggctaatttagcttcttcaaa 7347955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 42740501 - 42740587
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaattta 89  Q
    ||||||||| |||||||||||| || |  |||||||||| || || ||||| ||||||||||||| ||| |||  | ||||||||||    
T  42740501 ttgggttggtctagtggtattagcttgaaatttgggagtttgatcatcctcaaggtctcaggttcaattctctctggtgtcaattta 42740587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 3305231 - 3305146
Alignment:
Q  29 gggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| |||||| ||| || ||||| ||||||||  |||||||||||  | || ||||||||||||||||| ||| ||||| ||||    
T  3305231 gggatctgggagcgtgctcctcctcaaggtctcaaattcgattatctctggtgccaatttaggtgggctaatttatcttctgcaaa 3305146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4830492 - 4830605
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||   | ||||| || ||||||| || ||||| ||||||||||||| | | | || | ||||||||| | |||  |||     
T  4830492 acttgggttggcctggtggtatttgtttgggatctgagagtgtgttcctcctcgaggtctcaggttcaaatttatacggtgtcaatttggatggattaat 4830591  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  4830592 ttagcttcttcaaa 4830605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 16843832 - 16843753
Alignment:
Q  34 ttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||||||| || ||| | || |||||||||||||| |||  | ||||||||||| |||||| | ||||||||||||||    
T  16843832 ttgggagtgtgctcctccgcaagatctcaggttcgattctctccggtgtcaatttagatgggct-atttagcttcttcaaa 16843753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 27750737 - 27750805
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||| ||| |||||||   || |||| ||||||||||| || ||||| |||||||||||||||||    
T  27750737 ttgggttgccctcgtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgatt 27750805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33549109 - 33549218
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || ||||||||  || ||||  |||||||||| || ||||| ||||||||||||||||| ||| ||||| ||||||||||| |||||     
T  33549109 acttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgagctaat 33549208  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  33549209 ttagcttctt 33549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 6758493 - 6758380
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||| |||||||| ||||||||  ||  ||||||||||||||| ||  |||| |||||||| | |||||| |||  | ||||||||||||||||| ||     
T  6758493 acttgtgttggcctggtggtattggcttaggatttgggagtgtgctccacctcgaggtctcaagatcgattctctctggtgtcaatttaggtgggcaaat 6758394  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  6758393 ttagcttcttcaaa 6758380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 21418477 - 21418588
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||| ||||||||  || |||| ||||||||||| || ||||| | |||||| |||||||| ||     || ||||| ||||||||||| ||    
T  21418477 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctccatgtctcaagttcgattctccctagtgccaattaaggtgggctaattt 21418576  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  21418577 agcttcttcaaa 21418588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 12633014 - 12633124
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| ||  ||| |||| ||| |||||||||||||||| || || || || ||||| |||||||| |||   ||||||||||| |||| ||||     
T  12633014 acttgggttgtcccggtgatattgacttgggatttgggagtgtgctcctcttcgagatctcatgttcgattctctccaatgtcaatttaagtggactaat 12633113  T
Q  101 ttagcttcttc 111  Q
    |||||||||||    
T  12633114 ttagcttcttc 12633124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 12234578 - 12234469
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||| ||||||||| |||||||| ||| ||||  |||||||||| ||   ||| ||||||||||||||||| |||    ||||||||||| |||| |||     
T  12234578 acttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctccagtgtcaatttagatgggataat 12234479  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  12234478 ttagcttctt 12234469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 31623062 - 31622949
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| |  ||||||||  || ||||  |||||||||| || ||||| |||||||||||| || |  ||  | ||||||||| ||||||||||     
T  31623062 acttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtttgaatcactccggtgtcaatttgggtgggctaat 31622963  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  31622962 ttagcttcttcaaa 31622949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 28363948 - 28364055
Alignment:
Q  7 gttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagct 106  Q
    |||||| ||||||||||   | ||||| || ||||||| || ||||| ||||||||| |||||||||||  | ||||||||| | |||||||| |||  |    
T  28363948 gttggcatagtggtattggtttgggatctgcgagtgtgctcctcctcaaggtctcagattcgattatctctggtgtcaatttggatgggctaatttaatt 28364047  T
Q  107 tcttcaaa 114  Q
    ||||||||    
T  28364048 tcttcaaa 28364055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12188374 - 12188304
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || ||||| |||| ||| ||||||||    
T  12188374 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgatt 12188304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14557967 - 14558080
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || ||||| ||  || ||||  ||| |||||| || |||||  |||||||||||||||| ||  || ||||||||| ||||| ||||     
T  14557967 acttgggttggtctggtggtgttggcttgggacctggaagtgtgctcctcctccgggtctcaggttcgattctcccgg-tgtcaatttgggtggtctaat 14558065  T
Q  101 ttagcttcttcaaac 115  Q
    |||||||||||||||    
T  14558066 ttagcttcttcaaac 14558080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 1056756 - 1056643
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| ||||||||||||  |  |||| |||||||| || || ||||| |||| | | |||||||| |||  | || ||| ||||||||| |||     
T  1056756 acttgggttgacctagtggtattggcctgggacttgggagtatgctcatcctcaaggttttaagttcgattctctctggtgccaagttaggtgggttaat 1056657  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  1056656 ttagcttcttcaaa 1056643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 11423572 - 11423641
Alignment:
Q  2 cttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||| ||| || |||||||| ||| ||||||||||||| || |  ||||| |||||||||||||||||    
T  11423572 cttgggctggtctggtggtattgacttgggatttgggagtatgcttctcctcgaggtctcaggttcgatt 11423641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 30127405 - 30127518
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || ||||||||  || ||| | |||||||||| || || || ||||||||||||||||| | |  | || |||||||||| || |||     
T  30127405 acttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctcaggttcgattctttccggtgccaatttaggtaggttaat 30127504  T
Q  101 ttagcttcttcaaa 114  Q
    |||||||| |||||    
T  30127505 ttagcttcctcaaa 30127518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 3715462 - 3715566
Alignment:
Q  6 ggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagc 105  Q
    |||||| ||||||||||| ||| | ||| ||||||| || |  || || |||||||| |||||||| |||    |||||||||||||||||| | |||||    
T  3715462 ggttgggctagtggtattgacttgagatctgggagtatgcttctcgtcgaggtctcaagttcgattctctccagtgtcaatttaggtgggctgatttagc 3715561  T
Q  106 ttctt 110  Q
    |||||    
T  3715562 ttctt 3715566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 12216803 - 12216847
Alignment:
Q  55 aggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    ||||||||||||||||| ||| |  ||||||||||||||||||||    
T  12216803 aggtctcaggttcgattctcttgactgtcaatttaggtgggctaa 12216847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 7949525 - 7949412
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||| |||||||| ||||||  || ||||  | |||||||| || ||||| ||||||||||||||||| |||  | ||||||||||||||||||||     
T  7949525 acttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaat 7949426  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  7949425 ttagcttcttcaaa 7949412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 49576963 - 49576852
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||| ||||||||  ||  ||| ||||||||||| || ||||| ||||||||||||||||| |||   |||||||||| ||||| |||||||    
T  49576963 ttgggttggcctggtggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggttcgattctctccaatgtcaatttgggtggactaactt 49576864  T
Q  103 agcttcttcaaa 114  Q
    | ||||||||||    
T  49576863 aacttcttcaaa 49576852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21660215 - 21660106
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || |||||||| ||| | ||| |||||||||| |||||||| |||||||| ||||||||||||    ||||||||||||| | ||||     
T  21660215 acttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtagactaat 21660116  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  21660115 ttagcttctt 21660106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21668979 - 21668870
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| || |||||||| ||| | ||| |||||||||| |||||||| |||||||| ||||||||||||    ||||||||||||| | ||||     
T  21668979 acttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtagactaat 21668880  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  21668879 ttagcttctt 21668870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 51954134 - 51954232
Alignment:
Q  16 gtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||| ||| ||| |||| |||||||| || || ||||| |||||||||||| ||||||||  | ||||||||| |||||||||| ||||||||||||||    
T  51954134 gtggcattgacttgggacttgggagtatgctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgggctaatttagcttcttcaaa 51954232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 28635701 - 28635814
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| ||| |||||| | ||| ||||| |||||||||| || ||||  |||||| |||||||||| |||  | || |||||| ||||||||||     
T  28635701 acttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctctggtgccaatttgggtgggctaat 28635800  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  28635801 ttagcttcttcaaa 28635814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19680859 - 19680789
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||| ||||||||||||||||  || |||| ||||||||||| |||||||| |||||| ||||||||||    
T  19680859 acttggattggcctagtggtattcgcttgggacttgggagtgtgctcttcctcaaggtcttaggttcgatt 19680789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37109422 - 37109352
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || ||||| |||||||||||||||||    
T  37109422 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgatt 37109352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 18404952 - 18404845
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||  |||||||||| ||| ||||||||||| | |  || || || | |||||||||||||||||||| | |||||||||| ||||| ||  ||    
T  18404952 ttgggttggtttagtggtattgacttgggatttgggaatatactcctcatcaatgtctcaggttcgattatctaaggtgtcaatttaagtgggttagttt 18404853  T
Q  103 agcttctt 110  Q
    ||||||||    
T  18404852 agcttctt 18404845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9937032 - 9936926
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||||||||||  ||| | || ||||||||||| || ||||| | || |||||||||||| ||   | ||||||||| |||||| |||     
T  9937032 acttgggttggcctagtggtatcgacttgagacttgggagtgtgctcctcctcgaagtttcaggttcgattctcaccgttgtcaatttgggtgggttaat 9936933  T
Q  101 ttagctt 107  Q
    |||||||    
T  9936932 ttagctt 9936926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 13015444 - 13015538
Alignment:
Q  13 ctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagctt 107  Q
    |||||||||||  || |||| ||||||||||| || ||||| | |||||| |||||||| |||  | |||||||||||||||| ||| |||||||    
T  13015444 ctagtggtattggcttgggacttgggagtgtgctcctcctcgaagtctcatgttcgattctctcaggtgtcaatttaggtgggttaatttagctt 13015538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19238648 - 19238578
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||| ||||||||  || |||| ||||||||||| || ||||| ||||||| |||||||||    
T  19238648 acttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctcgggttcgatt 19238578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 37274531 - 37274417
Alignment:
Q  1 acttgggttggcctagtggta-ttaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaa 99  Q
    ||||||||||||||||| ||| ||  || ||||  |||||||||| || ||||| |||||| |||||||||| |||  | ||  |||||| |||||||||    
T  37274531 acttgggttggcctagtcgtaattggcttgggacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaa 37274432  T
Q  100 cttagcttcttcaaa 114  Q
     ||||||||||||||    
T  37274431 tttagcttcttcaaa 37274417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 37720285 - 37720171
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||| ||||  || ||||  ||||||||||  | ||||| ||||| ||||||||||| ||   |   ||||||||||||||||||     
T  37720285 acttgggttggcctggtgttattggcttgggacctgggagtgtgcccctcctcaaggtcccaggttcgattctcccagggatcaatttaggtgggctaat 37720186  T
Q  101 ttagcttcttcaaac 115  Q
    |||||||||||||||    
T  37720185 ttagcttcttcaaac 37720171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31826614 - 31826723
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| |||||||||||   || |||||||| ||||||| || ||||| |||||||| ||||||||  ||    ||||||||| ||||||||||     
T  31826614 acttgggttgccctagtggtataggcttgggatttgcgagtgtgctcctcctcaaggtctcaagttcgattccctttagtgtcaatttgggtgggctaat 31826713  T
Q  101 ttagcttctt 110  Q
    ||| ||||||    
T  31826714 ttaccttctt 31826723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 46545716 - 46545829
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || | ||  || ||||||| || ||||| || |||||| ||||||| |||  ||||||||||||| ||| ||||     
T  46545716 acttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttagatggactaat 46545815  T
Q  101 ttagcttcttcaaa 114  Q
    |||| || ||||||    
T  46545816 ttagttttttcaaa 46545829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 51250593 - 51250484
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || ||||| |||||||||| ||  |||| || ||||| ||||||||  ||  | || |||||| ||||||||||     
T  51250593 acttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagttcgattccctccggtgccaatttgggtgggctaat 51250494  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  51250493 ttagcttctt 51250484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 38869783 - 38869843
Alignment:
Q  11 gcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||  || ||||| |||||||||| || ||||| |||||||||||||||||    
T  38869783 gcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 38869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 24124098 - 24124052
Alignment:
Q  29 gggatttgggagtgtggtcttcctctaggtctcaggttcgattatct 75  Q
    ||||||||||||||||||| ||||  |||||| ||||||||||||||    
T  24124098 gggatttgggagtgtggtcctccttgaggtctgaggttcgattatct 24124052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31759729 - 31759659
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||  |||||||||||  || |||| ||||||||||| || ||||| ||||||||| |||||||    
T  31759729 acttgggttgatctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtctcagattcgatt 31759659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47044722 - 47044792
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||| ||||||| |||||||| ||| ||||| || |||| || || ||||| |||||||||||||||||    
T  47044722 acttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcaggttcgatt 47044792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 47386808 - 47386750
Alignment:
Q  55 aggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaa 113  Q
    ||||||||||||| ||| |||    |||||||||||||||||||| |||||||||||||    
T  47386808 aggtctcaggttcaattctctctagtgtcaatttaggtgggctaatttagcttcttcaa 47386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 55427271 - 55427165
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || ||||  ||||||| || || | ||| ||||||||||||||||| ||   | || |||||| ||||||||||     
T  55427271 acttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcgattctccgcggtgccaatttgggtgggctaat 55427172  T
Q  101 ttagctt 107  Q
    |||||||    
T  55427171 ttagctt 55427165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13901747 - 13901860
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| |||||||||||  || | ||  |||||||||| || ||||  |||||||| |||| ||| | |   |||| |||||||||||| |||     
T  13901747 acttgggttggtctagtggtattggcttgagacctgggagtgtgttcctccttgaggtctcaagttcaattctatctaatgttaatttaggtgggttaat 13901846  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  13901847 ttagcttcttcaaa 13901860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 24234650 - 24234762
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| ||  ||||||||  || |||| ||||||||||| || ||||  |||||||| |||||||| |||  || ||||| |||||| ||||||     
T  24234650 acttgggttgtccaggtggtattggcttgggacttgggagtgtgctcatcctgaaggtctcaagttcgattctctcaga-gtcaaattaggtaggctaat 24234748  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||| ||||||    
T  24234749 ttagcttattcaaa 24234762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 30584836 - 30584783
Alignment:
Q  58 tctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttc 111  Q
    ||||||||||||||||||  ||||||||||||| || ||||| |||| ||||||    
T  30584836 tctcaggttcgattatctccgatgtcaatttagatgagctaatttagtttcttc 30584783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 30938278 - 30938177
Alignment:
Q  13 ctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttca 112  Q
    |||||||||||   | ||||| | |||||||| || ||||| ||||||||||||||||| ||    ||| ||||||||||||| ||  ||||||||||||    
T  30938278 ctagtggtattggtttgggatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttca 30938179  T
Q  113 aa 114  Q
    ||    
T  30938178 aa 30938177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 45060983 - 45061096
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| |||||||||||| ||| ||| ||||| |||||  || |  || || |||||  |||||||||||  ||||||||||||  |||||||      
T  45060983 acttgggttgacctagtggtattgacttggggtttggaagtgtactcctgttcaagatctcaaattcgattatcttcgatgtcaatttaaatgggctagt 45061082  T
Q  101 ttagcttcttcaaa 114  Q
    | ||||||||||||    
T  45061083 tgagcttcttcaaa 45061096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42644963 - 42644907
Alignment:
Q  19 gtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatct 75  Q
    ||||| ||| ||||| || ||||||| |||||||| | |||||||||||||||||||    
T  42644963 gtattgacttgggatctgagagtgtgttcttcctcaaagtctcaggttcgattatct 42644907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 41704 - 41591
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || | ||| || |||| || || ||||| ||||||||||||| ||| |||  ||||||||||| ||||||||||     
T  41704 acttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaat 41605  T
Q  101 ttagcttcttcaaa 114  Q
    ||||| ||||||||    
T  41604 ttagcctcttcaaa 41591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 29503276 - 29503388
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||   | ||||  |||||||||| || ||||| ||||||||||||||||| ||  || |||||||||| |||||| ||     
T  29503276 acttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcccgg-tgtcaatttaagtgggcaaat 29503374  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  29503375 ttagcttcttcaaa 29503388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 42327466 - 42327357
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || ||||| ||||||||||||||||| |||  | || |||||| ||||||||||     
T  42327466 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaat 42327367  T
Q  101 ttagcttctt 110  Q
    ||||| ||||    
T  42327366 ttagcatctt 42327357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1435069 - 1435181
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||| |||||||| |  || ||||||| |||||||| |  ||||| ||||||||| ||||||| |||  | ||||||||| ||||||||||     
T  1435069 acttgggttggcatagtggtactggcttgggatttaggagtgtgcttctcctcaaggtctcag-ttcgattctctctggtgtcaatttgggtgggctaat 1435167  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  1435168 ttagcttcttcaaa 1435181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 42602559 - 42602672
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||||||||||||  || ||||  |||||||||| || | ||| |||||| ||||| |||| |||  | || |||||| ||||||||||     
T  42602559 acttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaat 42602658  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  42602659 ttagcttcttcaaa 42602672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3001384 - 3001493
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||||||||||| ||| | ||| | |||||||| || ||||  || ||||||||||||||||||  | || || |||| |||||||||     
T  3001384 acttgggttggcctagtggtattgacttgagatctaggagtgtgctcctccttgagatctcaggttcgattatctctggtgccagtttatgtgggctaat 3001483  T
Q  101 ttagcttctt 110  Q
    |||| |||||    
T  3001484 ttaggttctt 3001493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 11251092 - 11251205
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||| ||||||| ||||||||||  || |||| |||| |||||| || ||||| |||||||||||| |||| |||  | |||||||||||||| |||||     
T  11251092 acttaggttggcttagtggtattggcttgggacttggaagtgtgctcctcctcaaggtctcaggtttgattctctctggtgtcaatttaggtgtgctaat 11251191  T
Q  101 ttagcttcttcaaa 114  Q
    ||| ||| ||||||    
T  11251192 ttaacttattcaaa 11251205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 25637184 - 25637269
Alignment:
Q  29 gggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| |||||||||| || | ||| |||||||||||||| || |||  |||| ||||||||||||||||| ||| ||||||||||    
T  25637184 gggatctgggagtgtgctccttctcgaggtctcaggttcggttctctccgatgccaatttaggtgggctaatttaacttcttcaaa 25637269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37480080 - 37480193
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| ||||||||  || ||||  || ||||||| || ||||| ||||||||||||||||| ||   | |  |||||| ||||||||||     
T  37480080 acttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaat 37480179  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  37480180 ttagcttcttcaaa 37480193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 38854485 - 38854420
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| ||||||||||||||||||||   |  ||||||||||||||||||| ||||||||||||||    
T  38854485 tcctcaaggtctcaggttcgattatcaccggggtcaatttaggtgggctaatttagcttcttcaaa 38854420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 33582015 - 33582091
Alignment:
Q  38 gagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||| || ||||  ||||||||||||||||| |||   |||||||||||||||| |||| ||||||||||||||    
T  33582015 gagtgtgctcctccttgaggtctcaggttcgattctctctaatgtcaatttaggtggactaatttagcttcttcaaa 33582091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4439050 - 4438980
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||||||| ||||||||||| ||||| || ||||||| || ||||| ||||| || ||||||||    
T  4439050 acttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctcaaggtcgcatgttcgatt 4438980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14500282 - 14500352
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||| ||||||||||||||| | || | ||| |||||||||| || ||||||||||||||| |||||||    
T  14500282 acttggtttggcctagtggtataagcttgagatctgggagtgtgctcctcctctaggtctcagattcgatt 14500352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34041659 - 34041589
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||||||||||||||| |||  |||| || ||||||| || ||||| |||||||||||| ||||    
T  34041659 acttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgatt 34041589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39714997 - 39715067
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||| | |||||||| ||| ||||  |||||||||| || ||||| |||||||||||||||||    
T  39714997 acttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 39715067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 28846708 - 28846805
Alignment:
Q  13 ctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttctt 110  Q
    ||||||||||| ||| ||||  |||||||||| || ||||| | ||||||||||||||||||   ||||||||||| ||| | |||| ||| ||||||    
T  28846708 ctagtggtattgacttgggacctgggagtgtgctcctcctcgatgtctcaggttcgattatcaccgatgtcaatttgggtagactaatttaacttctt 28846805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 38856185 - 38856120
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| |||||||| ||||||||||||| | |||| |||| | |||||||| ||||||||||||||    
T  38856185 tcctcaaggtctcatgttcgattatctacggtgtccatttcgatgggctaatttagcttcttcaaa 38856120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 31573656 - 31573600
Alignment:
Q  57 gtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaa 113  Q
    ||||||||||||||| |||  ||||||||||||||||| |||| ||| |||||||||    
T  31573656 gtctcaggttcgattctcttcgatgtcaatttaggtggactaatttaacttcttcaa 31573600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 35203417 - 35203341
Alignment:
Q  38 gagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||| || ||||| | |||||| ||||||||||||  | |||||||||| ||||| ||| ||||||||||||||    
T  35203417 gagtgtgctcatcctcaaagtctcatgttcgattatctttggtgtcaatttaagtgggttaatttagcttcttcaaa 35203341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1729821 - 1729880
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtct 60  Q
    ||||||||||| |||||||||||  || |||| ||||||||||| || ||||||||||||    
T  1729821 acttgggttgggctagtggtattggcttgggacttgggagtgtgctcctcctctaggtct 1729880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 21195745 - 21195638
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||| |||||||||||   || || | ||||||||||| || ||||| |||||||||||||||||  ||    ||||||||| | |||||||| ||    
T  21195745 ttgggttgccctagtggtataggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaattt 21195646  T
Q  103 agcttctt 110  Q
    ||||||||    
T  21195645 agcttctt 21195638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16918649 - 16918579
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||||||||||||||||||||   | ||||| |||||||||| || ||||| |||||| ||||| ||||    
T  16918649 acttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggttggatt 16918579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 21213777 - 21213887
Alignment:
Q  4 tgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactta 103  Q
    |||||||| || ||||||||  || ||||  |||||||||| || ||||  ||||||||||||||||| ||   | || ||||||||||||||||  ||     
T  21213777 tgggttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgggctagtttt 21213876  T
Q  104 gcttcttcaaa 114  Q
    |||||||||||    
T  21213877 gcttcttcaaa 21213887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23052594 - 23052524
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||| ||||||||| ||||||||  || |||| ||||||||||| |  ||||| |||||||||||||||||    
T  23052594 acttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgatt 23052524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40416461 - 40416391
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    ||||||||||||||||||||||| ||| || |  ||||||| || || ||||  |||||||||||||||||    
T  40416461 acttgggttggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggttcgatt 40416391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 2311777 - 2311842
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| ||||||||||||||||| |||  | |||||||||  ||||||||| || |||||||||||    
T  2311777 tcctcgaggtctcaggttcgattttcttcggtgtcaatttgagtgggctaatttggcttcttcaaa 2311842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 7799106 - 7798994
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||| ||| ||||||||  || |||| ||||||||||| || ||||| || |||||| ||||||| |||    || ||||||| || ||||||     
T  7799106 acttgggttgtcctggtggtattggcttgggacttgggagtgtgctcctcctcgagatctcagattcgattctctccagtgccaatttaagt-ggctaat 7799008  T
Q  101 ttagcttcttcaaa 114  Q
    ||||||||||||||    
T  7799007 ttagcttcttcaaa 7798994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 9776313 - 9776403
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtggg 95  Q
    |||||||| |||||||||||| ||| |||||||||   |||| || || || || ||||||||||||||||||  ||||  ||||||||||||    
T  9776313 ttgggttgacctagtggtattgacttgggatttgg--atgtgctcatcttcaagatctcaggttcgattatctctgatgctaatttaggtggg 9776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26545845 - 26545950
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||  | ||||||||| || ||||| ||| |||||| || | ||| |||||||| ||| |||| |||  ||| |||||||||||||| |||     
T  26545845 acttgggttggtttggtggtattagcttgggatctggaagtgtgctccttctcgaggtctcaagtttgattctcttcgatatcaatttaggtgggttaat 26545944  T
Q  101 ttagct 106  Q
    ||||||    
T  26545945 ttagct 26545950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 37971956 - 37972013
Alignment:
Q  57 gtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||||||||||||| |||  | || ||||||||||||||||| ||||||||| ||||    
T  37971956 gtctcaggttcgattctctccggtgccaatttaggtgggctaatttagcttctacaaa 37972013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 41908673 - 41908596
Alignment:
Q  37 ggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    |||||||| || ||||| |||||||| |||||||||||   | || |||||| |||||||||  ||||||||||||||    
T  41908673 ggagtgtgctcctcctcaaggtctcaagttcgattatccccggtgccaatttgggtgggctagtttagcttcttcaaa 41908596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19244114 - 19244222
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||| ||| ||||||| ||| ||||  || ||||||| || ||| | ||||||||||||||||| |||  | || ||||||  |||||||||     
T  19244114 acttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggtgccaatttgagtgggctaat 19244213  T
Q  101 ttagcttct 109  Q
    |||| ||||    
T  19244214 ttagtttct 19244222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24058 - 24168
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    ||||||||||||||| ||||||| ||| |||| || |||||||| || || || | || ||||||||||||||||  |||| ||||||  |||||||||     
T  24058 acttgggttggcctaatggtattgacttgggacttaggagtgtgctcctcttcgaagtgtcaggttcgattatctctgatgccaatttgagtgggctaat 24157  T
Q  101 ttagcttcttc 111  Q
    ||| |||||||    
T  24158 ttaacttcttc 24168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 6988 - 6880
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    |||||||||||||||||||||  || |||| | ||||||||| || ||||| | ||||||||||||||   ||  | |||||||||  ||||||||| ||    
T  6988 ttgggttggcctagtggtattggcttgggactggggagtgtgctcctcctcaaagtctcaggttcgat---ctctggtgtcaatttgagtgggctaattt 6892  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  6891 agcttcttcaaa 6880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13117 - 13021
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggct 97  Q
    |||| ||||||| | ||||||||  || | ||| |||||||||| || ||||| ||||||||||||||||| |||  ||||||||||| ||||||||    
T  13117 acttcggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctccgatgtcaatttgggtgggct 13021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 95042 - 94968
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatct 75  Q
    |||||||||||||||||||||||  || || |  |||||||||| || ||||| ||||||||||||| |||||||    
T  95042 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcaattatct 94968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 11534 - 11603
Alignment:
Q  2 cttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgatt 71  Q
    |||||| |||||| ||||||||  || ||||| |||||||||| || ||||| |||||||||||||||||    
T  11534 cttgggatggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgatt 11603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 42687 - 42622
Alignment:
Q  49 tcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttcaaa 114  Q
    ||||| || ||||| |||||||| |||| | |||||||||||||||||||| ||| ||||||||||    
T  42687 tcctcaagatctcaagttcgattctctatggtgtcaatttaggtgggctaatttaacttcttcaaa 42622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 112287 - 112396
Alignment:
Q  1 acttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaac 100  Q
    |||||||||||||| || |||||  || || || ||||||||||||| || |  |||||| |||||||||| |||  | || |||||||||||| ||||     
T  112287 acttgggttggcctggttgtattggcttggaatctgggagtgtggtcctctttgaggtctgaggttcgattctctccggtgccaatttaggtggactaat 112386  T
Q  101 ttagcttctt 110  Q
    ||||||||||    
T  112387 ttagcttctt 112396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 42589 - 42479
Alignment:
Q  3 ttgggttggcctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaactt 102  Q
    ||||||||||||||||||||| ||| || || ||||||| || || |||||   ||||||||||||||| |||  | || ||||||| | ||| ||| ||    
T  42589 ttgggttggcctagtggtattgacttggaatctgggagtatgctcctcctcagagtctcaggttcgattctctttggtgccaatttaag-gggttaattt 42491  T
Q  103 agcttcttcaaa 114  Q
    ||||||||||||    
T  42490 agcttcttcaaa 42479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 8685 - 8639
Alignment:
Q  29 gggatttgggagtgtggtcttcctctaggtctcaggttcgattatct 75  Q
    ||||||||||||||||||| ||||  |||||| ||||||||||||||    
T  8685 gggatttgggagtgtggtcctccttgaggtctgaggttcgattatct 8639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 25406 - 25305
Alignment:
Q  13 ctagtggtattaactagggatttgggagtgtggtcttcctctaggtctcaggttcgattatctaggatgtcaatttaggtgggctaacttagcttcttca 112  Q
    |||||||||||  || | || ||||||||||| || | ||| |||||||||||||||||||||  | |||||||||   || ||||  ||||||||||||    
T  25406 ctagtggtattggcttgagacttgggagtgtgctccttctcaaggtctcaggttcgattatctctggtgtcaatttgaatgagctattttagcttcttca 25307  T
Q  113 aa 114  Q
    ||    
T  25306 aa 25305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University