View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3973_low_4 (Length: 227)

Name: NF3973_low_4
Description: NF3973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3973_low_4
NF3973_low_4
[»] chr5 (11 HSPs)
chr5 (8-227)||(16721295-16721514)
chr5 (131-227)||(17018535-17018630)
chr5 (131-224)||(7123643-7123734)
chr5 (180-227)||(5856335-5856382)
chr5 (167-219)||(27909372-27909423)
chr5 (183-227)||(32736642-32736686)
chr5 (131-227)||(34303676-34303770)
chr5 (180-224)||(36483577-36483621)
chr5 (181-224)||(11969854-11969897)
chr5 (180-227)||(33857890-33857937)
chr5 (170-227)||(4460586-4460642)
[»] chr8 (6 HSPs)
chr8 (129-227)||(6235348-6235445)
chr8 (134-224)||(6629250-6629340)
chr8 (142-220)||(6227604-6227681)
chr8 (180-224)||(34968321-34968365)
chr8 (131-227)||(41372625-41372719)
chr8 (175-223)||(44654651-44654699)
[»] chr2 (10 HSPs)
chr2 (180-227)||(740505-740552)
chr2 (167-227)||(20170475-20170535)
chr2 (180-227)||(741191-741238)
chr2 (131-218)||(32217010-32217096)
chr2 (194-227)||(27590607-27590640)
chr2 (147-224)||(27649307-27649382)
chr2 (146-227)||(35314197-35314277)
chr2 (167-227)||(744815-744874)
chr2 (175-223)||(37522396-37522443)
chr2 (129-182)||(39822461-39822516)
[»] chr1 (5 HSPs)
chr1 (133-227)||(42470287-42470378)
chr1 (186-223)||(18090720-18090757)
chr1 (131-179)||(1146641-1146689)
chr1 (167-219)||(27506658-27506709)
chr1 (195-227)||(31239157-31239189)
[»] chr7 (9 HSPs)
chr7 (150-227)||(38321385-38321461)
chr7 (167-227)||(4094212-4094271)
chr7 (167-227)||(39599206-39599265)
chr7 (167-227)||(39990719-39990778)
chr7 (188-227)||(7606342-7606381)
chr7 (192-227)||(39617087-39617122)
chr7 (180-227)||(45884276-45884323)
chr7 (151-224)||(10039289-10039361)
chr7 (167-227)||(28760614-28760673)
[»] chr3 (8 HSPs)
chr3 (130-227)||(35963881-35963977)
chr3 (192-224)||(38374161-38374193)
chr3 (167-224)||(1148871-1148927)
chr3 (187-220)||(10282436-10282469)
chr3 (142-227)||(14351941-14352025)
chr3 (131-184)||(47411195-47411247)
chr3 (131-227)||(32797376-32797471)
chr3 (130-170)||(54114487-54114527)
[»] chr6 (8 HSPs)
chr6 (173-227)||(32938961-32939014)
chr6 (180-227)||(33489509-33489556)
chr6 (187-225)||(8872441-8872479)
chr6 (131-213)||(14237458-14237539)
chr6 (185-227)||(14883416-14883458)
chr6 (186-223)||(34603597-34603634)
chr6 (186-223)||(34724874-34724911)
chr6 (131-224)||(34806293-34806386)
[»] chr4 (5 HSPs)
chr4 (151-223)||(11159943-11160014)
chr4 (192-227)||(11168791-11168826)
chr4 (186-223)||(29099950-29099987)
chr4 (187-227)||(2599445-2599485)
chr4 (167-227)||(33350479-33350538)
[»] scaffold0047 (1 HSPs)
scaffold0047 (192-224)||(65648-65680)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 16721514 - 16721295
Alignment:
Q  8 gataaaagttggaaggggaaaatgaaccaaaaatcatgtatcctctgtatatacactagcattcagattagaactccaagccggtcggtctgctcatttt 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16721514 gataaaagttggaaggggaaaatgaaccaaaaatcttgtatcctctgtatatacactagcattcagattagaactccaagccggtcggtctactcatttt 16721415  T
Q  108 attgagctaataatgcatataaatataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcactttta 207  Q
    ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |    
T  16721414 attaagctaataatgcgtataaatataaattattaacaatagtttttataaaatgttgattgtgattaaaattatagattatacatatttttcactttca 16721315  T
Q  208 tattgtaacaaactatactt 227  Q
    ||| |||| |||||||||||    
T  16721314 tatcgtaataaactatactt 16721295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 17018630 - 17018535
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||| ||| ||||||||||||||| ||||  || ||||||||||||||||||| || | |||||||  ||||| |||||||||||||||||||||    
T  17018630 tataaactacaaacaatagtttttatgaaattctggttttgattaaaattataga-tagatatattttgtactttcatattgtaacaaactatactt 17018535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 7123643 - 7123734
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    |||||||||| ||||||| |||||||||||| ||| |||| ||||||||||  | ||||  ||||||| |||||||||||| || |||||||||    
T  7123643 tataaattacgaacaataatttttataaaattttgattttaattaaaattaatgcttat--atattttgcacttttatattatagcaaactata 7123734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 5856335 - 5856382
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  5856335 tatagataatagatattttgcacttttatattgtaacaaactatactt 5856382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 27909372 - 27909423
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaa 219  Q
    |||||||||||||||||||| ||| ||||||| |||||||| |||||||||||    
T  27909372 ttttgattaaaattatagat-ataaatattttacacttttaaattgtaacaaa 27909423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 32736686 - 32736642
Alignment:
Q  183 agattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  32736686 agataatagatatttttcactttcatattgtaacaaactatactt 32736642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 34303770 - 34303676
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||| ||||||| |||  ||||||| ||| ||||| |||||||||||| | ||| ||||||| || ||| |||||||||||||| ||||||    
T  34303770 tataaattacgaacaatacttta-ataaaattttggttttgcttaaaattataggt-atagatattttgcattttcatattgtaacaaacaatactt 34303676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 36483577 - 36483621
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||    
T  36483577 tatagataatagatatttttcaattttatattgtaacaaactata 36483621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 11969897 - 11969854
Alignment:
Q  181 atagattatacatatttttcacttttatattgtaacaaactata 224  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||    
T  11969897 atagataatagatatttttcactttcatattgtaacaaactata 11969854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 33857937 - 33857890
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||| ||| |||||||||| ||| |||||||||||||||||||||    
T  33857937 tatagatgataaatatttttcattttcatattgtaacaaactatactt 33857890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 4460642 - 4460586
Alignment:
Q  170 tgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||||||||||| ||| | ||||| | |||||| |||||||||||||||||||||    
T  4460642 tgattaaaattatag-ttacaaatattctgcactttcatattgtaacaaactatactt 4460586  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 6235348 - 6235445
Alignment:
Q  129 aatataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||| |||| |||| || ||| || |||||||||||||| ||||||    
T  6235348 aatataaattacgaacaataatttttataaaattttgattttgattaaaattataga-tatagatatgttgcaccttcatattgtaacaaacaatactt 6235445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 6629340 - 6629250
Alignment:
Q  134 aaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    |||||| ||||||||||||||| ||| ||||| ||| |||||||||||||||||||| |||| ||||||||| ||||||||| ||| ||||    
T  6629340 aaattattaacaatagtttttaaaaagtgttgatttcgattaaaattatagattatagatatgtttcactttcatattgtaataaattata 6629250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 6227604 - 6227681
Alignment:
Q  142 aacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaac 220  Q
    ||||||| |||||||||||| ||| ||| |||||||| |||||| |||| |||| || |||||| ||||||||||||||    
T  6227604 aacaataatttttataaaattttgatttagattaaaaatataga-tatagatatgttgcactttcatattgtaacaaac 6227681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 34968321 - 34968365
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||    
T  34968321 tatagataatagatattttacactttcatattgtaacaaactata 34968365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 41372719 - 41372625
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||  ||||||||||| ||| || | ||| ||||||||||||||||||  ||||  |||||| |||||| ||| ||||||||| |||||||    
T  41372719 tataaattatgaacaatagtttatatgaatt-ttgattttgattaaaattatag-gtataactattttacactttcatagtgtaacaaattatactt 41372625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 44654651 - 44654699
Alignment:
Q  175 aaaattatagattatacatatttttcacttttatattgtaacaaactat 223  Q
    |||||||||  | ||||||||||| ||| ||||||||||||||||||||    
T  44654651 aaaattatacttaatacatattttacacatttatattgtaacaaactat 44654699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 740505 - 740552
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  740505 tatagatgatagatatttttcacttttatattgtaacaaactatactt 740552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 20170475 - 20170535
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||||||||||| ||| ||||||| || ||| ||||||||||||| |||||||    
T  20170475 ttttgattaaaattatagataatagatattttgcattttcatattgtaacaaattatactt 20170535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 741191 - 741238
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||| ||| |||||||| ||||| |||||||||||||||||||||    
T  741191 tatagatgatagatattttttactttcatattgtaacaaactatactt 741238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 32217010 - 32217096
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaa 218  Q
    |||||||||  ||||||| |||||||  ||| ||| ||||||||||||||||| | ||||  |||||| |||||| ||||||||||||    
T  32217010 tataaattataaacaatattttttatgcaattttgattttgattaaaattata-agtataattattttgcactttcatattgtaacaa 32217096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 27590640 - 27590607
Alignment:
Q  194 atttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||||||||| |||||||||||||||    
T  27590640 atttttcacttttatattataacaaactatactt 27590607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 27649382 - 27649307
Alignment:
Q  147 tagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    |||||||||| |||| | | ||| ||||||||||||| |||||| ||||||| || ||| ||||||||||||||||||    
T  27649382 tagtttttatgaaatatagatttcgattaaaattata-attatagatattttgca-tttcatattgtaacaaactata 27649307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 35314277 - 35314197
Alignment:
Q  146 atagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||||| | |||| ||| ||| |||||||||| ||  | ||| ||||||| |||||| |||||||||||||||||||||    
T  35314277 atagtttttgttaaattttgatttggattaaaattttatgt-atatatattttgcactttcatattgtaacaaactatactt 35314197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 744815 - 744874
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||||||||||  ||| ||||||| ||  ||||||||||||||||| ||||||    
T  744815 ttttgattaaaattatagac-ataaatattttgcaactttatattgtaacaaacaatactt 744874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 37522396 - 37522443
Alignment:
Q  175 aaaattatagattatacatatttttcacttttatattgtaacaaactat 223  Q
    |||||||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  37522396 aaaattatag-ttatatatattttacacatttatattgtaacaaactat 37522443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 39822461 - 39822516
Alignment:
Q  129 aatataaattactaaca--atagtttttataaaatgttgtttttgattaaaattat 182  Q
    |||||||||||| ||||  ||||||||||| |||| ||| ||||||||||||||||    
T  39822461 aatataaattacgaacattatagtttttatgaaattttgattttgattaaaattat 39822516  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 42470287 - 42470378
Alignment:
Q  133 taaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||| ||||||| ||||||| |||| ||| |||||||||||| |||||   ||| ||||||| ||||||||||||||||| ||||||||||    
T  42470287 taaattacaaacaataatttttatgaaattttgattttgattaaaaatatag--gataaatattttacacttttatattgtaac-aactatactt 42470378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 18090720 - 18090757
Alignment:
Q  186 ttatacatatttttcacttttatattgtaacaaactat 223  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  18090720 ttatatatattttgcacttttatattgtaacaaactat 18090757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 1146689 - 1146641
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaat 179  Q
    |||||||||| ||| |||||||||||||||| ||| |||||| ||||||    
T  1146689 tataaattaccaacgatagtttttataaaattttgattttgaataaaat 1146641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 27506709 - 27506658
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaa 219  Q
    ||||||||||||||||||| |||| |||||||  ||||| |||||||||||||    
T  27506709 ttttgattaaaattataga-tatagatattttatactttcatattgtaacaaa 27506658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 31239189 - 31239157
Alignment:
Q  195 tttttcacttttatattgtaacaaactatactt 227  Q
    ||||||||||| |||||||||||||||||||||    
T  31239189 tttttcactttcatattgtaacaaactatactt 31239157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 38321461 - 38321385
Alignment:
Q  150 tttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||| |||| ||| |||| ||||||||||||||| ||| |||||||  | |||||||||||||||||||||||||    
T  38321461 tttttatgaaattttgatttttattaaaattatagat-ataaatattttagatttttatattgtaacaaactatactt 38321385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 4094212 - 4094271
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||| ||||  ||||| ||||||| | ||||||||||||||||||||||||||    
T  4094212 ttttgattaaaactatat-ttataaatattttacgcttttatattgtaacaaactatactt 4094271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 39599265 - 39599206
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||| |||||||| |||||| ||||||| || ||| |||||||||||||||||||||    
T  39599265 ttttgattcaaattata-attatagatattttgcaatttcatattgtaacaaactatactt 39599206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 39990719 - 39990778
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||||||||||||||  | || ||||||| ||||||||||||||||||||| ||||||    
T  39990719 ttttgattaaaattataggct-tatatattttgcacttttatattgtaacaaaccatactt 39990778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 7606381 - 7606342
Alignment:
Q  188 atacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  7606381 atacatatttttcactttcatattgtaacaaacaatactt 7606342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 39617087 - 39617122
Alignment:
Q  192 atatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||||| |||||||||||||||||||||    
T  39617087 atatttttcactttcatattgtaacaaactatactt 39617122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 45884323 - 45884276
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||| ||| ||||||| ||| ||||||||||||||||||||||||    
T  45884323 tatagataatagatattttgcacatttatattgtaacaaactatactt 45884276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 10039289 - 10039361
Alignment:
Q  151 ttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    ||||||||||| ||  ||||||||||||||||| | |||| |||||||  | ||| ||||||||||||||||||    
T  10039289 ttttataaaattttaattttgattaaaattata-actatagatattttggattttcatattgtaacaaactata 10039361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 28760673 - 28760614
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||| ||||||||||||||| ||| ||||||| || ||| ||||| |||||||||||||||    
T  28760673 ttttaattaaaattatagat-ataaatattttacattttcatattataacaaactatactt 28760614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 35963977 - 35963881
Alignment:
Q  130 atataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||||||| || ||||||||| || |||| ||| |||||||||| |||||||  |||| ||||||| ||||||||||||| |  |||||||||||    
T  35963977 atataaattacgaataatagttttaatgaaattttgattttgattaatattatag-ctatagatattttgcacttttatattgcagtaaactatactt 35963881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 38374161 - 38374193
Alignment:
Q  192 atatttttcacttttatattgtaacaaactata 224  Q
    |||||||||||||||||||||||||||||||||    
T  38374161 atatttttcacttttatattgtaacaaactata 38374193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 1148927 - 1148871
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    ||||||||||||||||| | |||| ||||||| |||||| ||||||| ||||||||||    
T  1148927 ttttgattaaaattata-agtatagatattttgcactttgatattgtgacaaactata 1148871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 10282469 - 10282436
Alignment:
Q  187 tatacatatttttcacttttatattgtaacaaac 220  Q
    |||| |||||||||||||||||||||||||||||    
T  10282469 tatagatatttttcacttttatattgtaacaaac 10282436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 14351941 - 14352025
Alignment:
Q  142 aacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||||||||||| |||  ||| |||| |||||||| ||| || | | |||||||  ||||| |||||||||||||||||||||    
T  14351941 aacaatagtttttatgaaaatttgatttttattaaaatcata-ataagaaatattttaaactttcatattgtaacaaactatactt 14352025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 47411247 - 47411195
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatag 184  Q
    |||||||||| |||||| |||||||||| || ||| ||||||||||||||||||    
T  47411247 tataaattacgaacaat-gtttttataatattttgattttgattaaaattatag 47411195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 32797471 - 32797376
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||| ||||||| ||||||| |||| ||  |||| || |||||||||| || || ||| |||  ||||| ||||||||||||| |||||||    
T  32797471 tataaattacgaacaataatttttatgaaattttaatttttataaaaattataggtt-taaatactttgtactttcatattgtaacaaattatactt 32797376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 54114527 - 54114487
Alignment:
Q  130 atataaattactaacaatagtttttataaaatgttgttttt 170  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  54114527 atataaattacgaacaataatttttataaaatcttgttttt 54114487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 32939014 - 32938961
Alignment:
Q  173 ttaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||||| ||| ||||||| || |||||||||||||||||||||||||    
T  32939014 ttaaaattatagat-atagatattttgcaattttatattgtaacaaactatactt 32938961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 33489556 - 33489509
Alignment:
Q  180 tatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||| ||| ||||||| |||||| |||||||||||||||||||||    
T  33489556 tatagataatagatattttgcactttcatattgtaacaaactatactt 33489509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 8872441 - 8872479
Alignment:
Q  187 tatacatatttttcacttttatattgtaacaaactatac 225  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  8872441 tatatatatttttcactttcatattgtaacaaactatac 8872479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 14237458 - 14237539
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgt 213  Q
    |||||||||  || ||| ||||||||||||  ||  ||||||||||||||||| | |||| ||||||| ||||||||||||||    
T  14237458 tataaattaagaataattgtttttataaaaatttaattttgattaaaattata-aatataaatattttgcacttttatattgt 14237539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 14883416 - 14883458
Alignment:
Q  185 attatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||| |||| ||||||||||||||||||| |||||||||||    
T  14883416 attatatatatatttcacttttatattgtaaaaaactatactt 14883458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 34603597 - 34603634
Alignment:
Q  186 ttatacatatttttcacttttatattgtaacaaactat 223  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  34603597 ttatatatatttttcacctttatattgtaacaaactat 34603634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 34724874 - 34724911
Alignment:
Q  186 ttatacatatttttcacttttatattgtaacaaactat 223  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  34724874 ttatatatatttttcacctttatattgtaacaaactat 34724911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 34806293 - 34806386
Alignment:
Q  131 tataaattactaacaatagtttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactata 224  Q
    ||||||||||   ||| ||||||||| |||| ||| |||||  ||||||||||||| | | ||||||| || ||| |||| |||||||||||||    
T  34806293 tataaattacgtgcaaaagtttttatgaaattttgattttggctaaaattatagatcaaatatattttgcattttaatatcgtaacaaactata 34806386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 11160014 - 11159943
Alignment:
Q  151 ttttataaaatgttgtttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactat 223  Q
    ||||||||||| ||  |||||||||||||||||| | | | |||||||||||||| |||| ||||||||||||    
T  11160014 ttttataaaattttaattttgattaaaattataggt-acaaatatttttcactttaatatcgtaacaaactat 11159943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 11168826 - 11168791
Alignment:
Q  192 atatttttcacttttatattgtaacaaactatactt 227  Q
    ||||||||||||| ||||||||||||||||||||||    
T  11168826 atatttttcacttctatattgtaacaaactatactt 11168791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 29099987 - 29099950
Alignment:
Q  186 ttatacatatttttcacttttatattgtaacaaactat 223  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  29099987 ttatatatattttacacttttatattgtaacaaactat 29099950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 2599445 - 2599485
Alignment:
Q  187 tatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  2599445 tataaatattttacacttttatattgcaacaaactatactt 2599485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 33350538 - 33350479
Alignment:
Q  167 ttttgattaaaattatagattatacatatttttcacttttatattgtaacaaactatactt 227  Q
    |||||||||||| ||||||| | | ||||||| |||||||  |||||||||||||||||||    
T  33350538 ttttgattaaaagtatagat-acaaatattttacactttttaattgtaacaaactatactt 33350479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 65680 - 65648
Alignment:
Q  192 atatttttcacttttatattgtaacaaactata 224  Q
    |||||||||||||| ||||||||||||||||||    
T  65680 atatttttcactttcatattgtaacaaactata 65648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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