View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_high_11 (Length: 260)
Name: NF3974_high_11
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 30272937 - 30272888
Alignment:
| Q |
105 |
tcaatgaagaatacacttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30272937 |
tcaatgaagaatacacttttatcatactccctcaatactagatttttctc |
30272888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 36936678 - 36936629
Alignment:
| Q |
105 |
tcaatgaagaatacacttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36936678 |
tcaataaagaatacacttttatcatactccctcaatactagatttttctc |
36936629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 36936399 - 36936350
Alignment:
| Q |
105 |
tcaatgaagaatacacttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36936399 |
tcaataaagaatacacttttatcatactcccttaatactagatttttctc |
36936350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 41092782 - 41092735
Alignment:
| Q |
107 |
aatgaagaatacacttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
41092782 |
aatgaagaatacacttttatcatactccctcaacactcaatttttctc |
41092735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 3619809 - 3619760
Alignment:
| Q |
105 |
tcaatgaagaatacacttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3619809 |
tcaatgaagaatacacttttatcatactttctcaatactagatttttctc |
3619760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 53290217 - 53290171
Alignment:
| Q |
105 |
tcaatgaagaatacacttttatcatactccctcaatactagattttt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
53290217 |
tcaatgaagaatacacttttatcatactccttcgatactagattttt |
53290171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 23383379 - 23383420
Alignment:
| Q |
107 |
aatgaagaatacacttttatcatactccctcaatactagatt |
148 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||| |
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|
| T |
23383379 |
aatgaagaacacactcttatcatactccatcaatactagatt |
23383420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 31634833 - 31634804
Alignment:
| Q |
60 |
ccatcatggaaaagtaagttttaaccatta |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31634833 |
ccatcatggaaaagtaagttttaaccatta |
31634804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 29315290 - 29315243
Alignment:
| Q |
107 |
aatgaagaatacacttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
29315290 |
aatgaagaatacactcttatcatactccctcaacactcaatttttctc |
29315243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 16971012 - 16970965
Alignment:
| Q |
107 |
aatgaagaatacacttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
16971012 |
aatgaagaatacactcttatcatactccctcaacactcaatttttctc |
16970965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 46721925 - 46721890
Alignment:
| Q |
119 |
acttttatcatactccctcaatactagatttttctc |
154 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
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|
| T |
46721925 |
acttttatcatgctccctcaatactagatttttctc |
46721890 |
T |
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