View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_high_18 (Length: 236)
Name: NF3974_high_18
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 50985083 - 50984946
Alignment:
| Q |
84 |
aaatatttgatcgcttcaatccaacaactcaaaaaacattataaattaactctatgaagtcgatctaccaacctatcttgtatatatgatctattgatat |
183 |
Q |
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| T |
50985083 |
aaatatttgatcgcttcaatccaacaactcaaaaaacattataaattaactctatgatctcgatctaccaacctatcttgtatatatgatctattgatat |
50984984 |
T |
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| Q |
184 |
tacatttttaaaaatttaaaattaaatcttgactatat |
221 |
Q |
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| T |
50984983 |
tacatttttaaaattttaaaattaaatcttgactatat |
50984946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 51088217 - 51088080
Alignment:
| Q |
84 |
aaatatttgatcgcttcaatccaacaactcaaaaaacattataaattaactctatgaagtcgatctaccaacctatcttgtatatatgatctattgatat |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51088217 |
aaatatttgatcgcttcaatccaacaactcaaaaaacattataaattaactctatgatctcgatctaccaacctatcttgtatatatgatctattgatat |
51088118 |
T |
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| Q |
184 |
tacatttttaaaaatttaaaattaaatcttgactatat |
221 |
Q |
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| T |
51088117 |
tacatttttaaaattttaaaattaaatcttgactatat |
51088080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 50985165 - 50985115
Alignment:
| Q |
1 |
tctttttattttaagtgtttaagtggatcttgcatgtaagaatgtatcacc |
51 |
Q |
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| T |
50985165 |
tctttttattttaagtgtttaagtggatcttgcatgtaagtatgtatcacc |
50985115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 51088299 - 51088249
Alignment:
| Q |
1 |
tctttttattttaagtgtttaagtggatcttgcatgtaagaatgtatcacc |
51 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51088299 |
tctttttattttaagtgtttaagtggatcttgcatgtaagtatgtatcacc |
51088249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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