View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3974_high_2 (Length: 442)
Name: NF3974_high_2
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 43584566 - 43584977
Alignment:
| Q |
18 |
aaacaaggtggaaacaacgtacctataaattggttataataaaaccagtttagttaaagcttattnnnnnnntattatataattaataatgataataatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43584566 |
aaacaaggtggaaacaacgtacctataaattggttataataaaaccagtttagttaaagcttataaaaaaaatattatataattaataatgataataatg |
43584665 |
T |
|
| Q |
118 |
caaccttgcatatcaagttcgtgaacttatttaactagccttgatgtcgcacttcacaatttctacnnnnnnnnnnnnnnnnngctcacaatagaagcca |
217 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43584666 |
caaccttacagatcaagttcgtgaacttatttaactagccttgatgtcgcacttcacaatttctactatatatataa-------ctcacaatagaagcca |
43584758 |
T |
|
| Q |
218 |
tttgtactacatttctaattagaaacattttccttatttcatcacatacatt----tcttatcctttccttcactagaaacttgtgtagatgggtcgtgg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43584759 |
tttgtactacatttctaattagaaacattttccttatctcatcacatacattcttatcttatcctttccttcactagaaacttgtgtagatgggtcgtgg |
43584858 |
T |
|
| Q |
314 |
catagcctttggacgctttgatgattctttcagtgtgagctccattagggcttatgttgctgagttcatctcaaccttgatctttgtttttgctggtgtt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43584859 |
catagcctttggacgctttgatgattctttcagtgtgagctccattagggcttatgttgctgagttcatctcaaccttgatctttgtttttgctggtgtt |
43584958 |
T |
|
| Q |
414 |
ggttcagccatagcctatg |
432 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43584959 |
ggttcagccatagcctatg |
43584977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 311 - 432
Target Start/End: Complemental strand, 4190927 - 4190806
Alignment:
| Q |
311 |
tggcatagcctttggacgctttgatgattctttcagtgtgagctccattagggcttatgttgctgagttcatctcaaccttgatctttgtttttgctggt |
410 |
Q |
| |
|
||||||||| |||||| | |||||||||| |||||| | |||| |||| ||| ||| ||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
4190927 |
tggcatagcatttggaaggcttgatgattcattcagttttggctcaattaaggcctatattgctgagttcatctcaacattgctctttgtttttgctggt |
4190828 |
T |
|
| Q |
411 |
gttggttcagccatagcctatg |
432 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4190827 |
gttggttcagccatagcctatg |
4190806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University