View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3974_high_20 (Length: 227)
Name: NF3974_high_20
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_high_20 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30024771 - 30024997
Alignment:
| Q |
1 |
gtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaacaatacttaggtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30024771 |
gtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaacaatactcaggtgag |
30024870 |
T |
|
| Q |
101 |
ttaaaagcataacaagcactcttacaacccaccacttgattcatgtcacttgacctaacttgaaggctcatgggacacatgacgttaagatccctaacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024871 |
ttaaaagcataacaagcactcttacagcccaccacttgattcatgtcacttgacctaacttgaaggctcatgggacacatgacgttaagatccctaacac |
30024970 |
T |
|
| Q |
201 |
aaccggcgaattcacattttccgttac |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30024971 |
aaccggcgaattcacattttccgttac |
30024997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 45273206 - 45273361
Alignment:
| Q |
1 |
gtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaacaatacttaggtgag |
100 |
Q |
| |
|
||||||||| |||||||| || |||||||| |||||| ||||||||| || | ||||||| | ||| | |||| || || |||||| |||| ||| |
|
|
| T |
45273206 |
gtaagcctttgggcaagcagttttgaagattcttgaataagcagtgggcttgcaggtctgtggggtaccaaagttaccagtacagcaatacctaggagag |
45273305 |
T |
|
| Q |
101 |
ttaaaagcataacaagcactcttacaacccaccacttgattcatgtcacttgacct |
156 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||||| || ||| |||||| |||||| |
|
|
| T |
45273306 |
ttgaaagcagcacaagcacttctacaacccaccacgtgcttcttgtcacgtgacct |
45273361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University