View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3974_high_3 (Length: 412)
Name: NF3974_high_3
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_high_3 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 33732565 - 33732341
Alignment:
| Q |
18 |
aaataatggtgcaaatacgtgataaaattgtgaagccttgttgactaagtcatgaccaaagttaattaagaccactttcaattattaagaggtggatttt |
117 |
Q |
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| T |
33732565 |
aaataatggtgcaaatacgcgataaaattgtgaagccttgttgactaagtcatgaccaaagttaattaagaccactttcaattatt-agaggtggatttt |
33732467 |
T |
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| Q |
118 |
aactcaacaagacttcagattttgtaacatttagttccaaaccgtcgt-------------caattgatcaagccattaaagttgaggttgttacgacca |
204 |
Q |
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| T |
33732466 |
aactcaacaacacttcagattttgtaacatttagttccaaaccgtcttcaaatgatgaaagcaattgatcaagccattaaagttgaggttgttacgacca |
33732367 |
T |
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| Q |
205 |
gccgtagtgggtggctatgatcgtag |
230 |
Q |
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| T |
33732366 |
gccgtagtgggtggctatgatcgtag |
33732341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 33732334 - 33732213
Alignment:
| Q |
281 |
attgtatgaatgatagtcttaagtttggtcttggtttggtttgacttatcatcaaagaactcttgtacttgcatttttattttaattaaaatttcttgtt |
380 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33732334 |
attgtatgaatgatagtctcaagtttggtcttggtttggtttgacttatcatcaaagaactcttgtacttgcatttttattttaattaaaatttcttgtt |
33732235 |
T |
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| Q |
381 |
tttgctttgtctgtttcctttg |
402 |
Q |
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| T |
33732234 |
tttgctttgtctgtttcctttg |
33732213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 121476 - 121373
Alignment:
| Q |
183 |
aaagttgaggttgttacgaccagccgtagtgggtggctatgatcgtagcatattggtgacttcaattttgtggtttttattttggcccttgaatgatcat |
282 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||| | ||| || || |||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
121476 |
aaagttgaggttgttacgaccagccatagtgagtg-ctacgtctgtaacaccttaatgacttcaatttggtggtttttattttggcacttcaatgatcac |
121378 |
T |
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| Q |
283 |
tgtat |
287 |
Q |
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||||| |
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| T |
121377 |
tgtat |
121373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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