View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3974_high_5 (Length: 323)
Name: NF3974_high_5
Description: NF3974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3974_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 109 - 310
Target Start/End: Original strand, 53251149 - 53251350
Alignment:
| Q |
109 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53251149 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
53251248 |
T |
|
| Q |
209 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53251249 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
53251348 |
T |
|
| Q |
309 |
cc |
310 |
Q |
| |
|
|| |
|
|
| T |
53251349 |
cc |
53251350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 109 - 310
Target Start/End: Original strand, 53236731 - 53236932
Alignment:
| Q |
109 |
gctggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatc |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53236731 |
gctggtttccttttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggagaacagttttagttgctttcattatttcttcaacagatc |
53236830 |
T |
|
| Q |
209 |
ttccagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53236831 |
ttccagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcaatctcttctttagt |
53236930 |
T |
|
| Q |
309 |
cc |
310 |
Q |
| |
|
|| |
|
|
| T |
53236931 |
cc |
53236932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 112 - 310
Target Start/End: Original strand, 44740818 - 44741016
Alignment:
| Q |
112 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggaggaggacagttttagttgctttcattatttcttcaacagatcttc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44740818 |
ggtttcctcttctcaagaaatgtatcaaaagctttggctgtatcgggcttctggagaagaacggttttagttgctttcattatttcttcaacagatcttc |
44740917 |
T |
|
| Q |
212 |
cagtgccaatgtattctgaaacaacctcccatctgcttgaagttcctttgggaaactttcgtattccttttctcaatagctcgatctcttctttagtcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44740918 |
cagtgccaatgtattctgaaacaacctcccatctccttgaagttcctttgggaaacttttgtattccttttctcaatagctcgatctcttctttagtcc |
44741016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University